Pairwise Alignments

Query, 304 a.a., branched-chain amino acid transporter permease subunit LivH from Pseudomonas simiae WCS417

Subject, 296 a.a., integral membrane protein of the ABC-type Nat permease for neutral amino acids NatD from Synechococcus elongatus PCC 7942

 Score =  140 bits (353), Expect = 4e-38
 Identities = 100/305 (32%), Positives = 161/305 (52%), Gaps = 38/305 (12%)

Query: 7   QQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAY--LAAISLALLAYFGIE 64
           Q  +NGL  GS+  L A G T++YGI+ + NFA GE   + AY  L A SL L  +  I 
Sbjct: 17  QLAINGLATGSLLALAATGLTLIYGILRLTNFAQGEFLTLGAYFTLVANSLGLSLWLAI- 75

Query: 65  SFPLLILGTLIFTVVVTGVYGWVIERVAYKPLR----NSTRLAPLISAIGISLILQNYAQ 120
             PL  + T+   ++         E V ++PLR    N+T L  +I  IG+SL L+N   
Sbjct: 76  --PLGAIATIALCLLG--------EAVLWEPLRRQRVNTTTL--IILTIGLSLFLRNLVI 123

Query: 121 IAQGAKQQGIPTLLAGAWRVDIGSGF----VQLTYTKVFILVAAFAGMALLTYVIKYTKL 176
           +  GA  Q        A+R+ +        +++T   + +++ A A + LL +V++ T +
Sbjct: 124 LIWGAGNQ--------AYRLAVQPALTLWGLRITLNSLLVVIGAAAALVLLHWVLQRTSI 175

Query: 177 GRMCRATQQDRKMASILGINTDRVISYVFVIGAAMAALAGVLITLNYGTFDFYA---GFI 233
           G+  RA   D  +A + G+  + VI + +VI   + A+AG L    YG         G+ 
Sbjct: 176 GKGMRAIADDPDLARVSGVPVETVIRWTWVIAGGLTAIAGGL----YGLITAVRPTMGWN 231

Query: 234 IGIKAFTAAVLGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVVILIFRPQ 293
           + +  F +A+LGGIGS  GA+ GG+ILG ++ L +  + ++YK   +F +L+ +L+ RPQ
Sbjct: 232 LILPLFASAILGGIGSPYGAIAGGLILGFAQELSTYWLPAEYKLAVAFVILIGVLVIRPQ 291

Query: 294 GLLGR 298
           GL  R
Sbjct: 292 GLFAR 296