Pairwise Alignments

Query, 304 a.a., branched-chain amino acid transporter permease subunit LivH from Pseudomonas simiae WCS417

Subject, 297 a.a., inner-membrane translocator (NCBI) from Rhodospirillum rubrum S1H

 Score =  127 bits (319), Expect = 3e-34
 Identities = 88/307 (28%), Positives = 161/307 (52%), Gaps = 20/307 (6%)

Query: 4   IFLQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGI 63
           +  Q L+NG+ +G++YG++A+ + ++Y    ++NFA GE  +I A+   +  +LL  F +
Sbjct: 5   LLFQLLLNGVIVGTLYGVVAMCFVLIYKSTQVVNFAQGEFLLIGAW---VCFSLLTDFQL 61

Query: 64  ESFPLLILGTLIFTVVVTGVYGWVIERVAYKPLRNSTRLAPLISAIGISLILQNYAQIAQ 123
                 +LG  +FT+V    +G +++ V  +P+     ++ ++  IG+S+ L+       
Sbjct: 62  P----FVLG-FLFTLVFMMAFGVLLQVVVLRPMIGEPIISVIMVTIGLSIFLRALVNWVF 116

Query: 124 GAKQQGIPTLLAGAWRVDIGSGFVQLTYTKVFILVAAFAGMALLTYVIKYTKLGRMCRAT 183
           G   +  P +   A  V I    V+  Y   F +  +   M    Y  +Y++ G   RAT
Sbjct: 117 GQSARSFPKIFE-AESVTIAGLNVEPAYLMSFAI--SIIIMIGFYYFFRYSRHGLAMRAT 173

Query: 184 QQDRKMASILGINTDRVISYVFVIGAAMAALAGVLITLNYGTFDFYAGFIIGIKAFTAAV 243
             D++ A  LGI+  RV +  + I A ++ALAGV++ +  G     A   +GIK F A +
Sbjct: 174 AFDQQAAQSLGISVKRVFAMAWAISAMVSALAGVVMGMVNGVSS--ALSFVGIKVFPAVI 231

Query: 244 LGGIGSLPGAMLGGIILGISESLFSGLINSDY------KDVFSFSLLVVILIFRPQGLLG 297
           LGG+ S+ GA++GG+I+G+ E+  +  ++  Y        +  F +L+ IL+ +P GL G
Sbjct: 232 LGGLDSIIGAIVGGLIIGVLEN-GAEFVDGQYLHWGNMLTIAPFWVLIAILVIKPYGLFG 290

Query: 298 RPLVAKV 304
              + +V
Sbjct: 291 TKKIERV 297