Pairwise Alignments

Query, 304 a.a., branched-chain amino acid transporter permease subunit LivH from Pseudomonas simiae WCS417

Subject, 290 a.a., branched-chain amino acid ABC transporter permease from Rhodopseudomonas palustris CGA009

 Score =  160 bits (404), Expect = 4e-44
 Identities = 101/300 (33%), Positives = 172/300 (57%), Gaps = 15/300 (5%)

Query: 6   LQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGIES 65
           LQ L++GLT+G+VY L+A+G+T+VY    ++NFA GE  M+   +      + AY     
Sbjct: 5   LQFLISGLTVGAVYALVALGFTLVYHASDVVNFAQGEFVMLGGMVT-----VFAYAAGLP 59

Query: 66  FPLLILGTLIFTVVVTGVYGWVIERVAYKPLRNSTRLAPLISAIGISLILQNYAQIAQGA 125
            PL  L  +I  VVV  +  W+    A  P R ++ ++ +I  IG S++L+  AQI    
Sbjct: 60  LPLAALLAVIVAVVVGLLLYWL----AIAPARGASAVSLIIITIGASILLRGAAQIVFDK 115

Query: 126 KQQGIPTLLAGAWRVDIGSGFVQLTYTKVFILVAAFAGMALLTYVIKYTKLGRMCRATQQ 185
           +   +P   +G   + +    +Q     +++L  A   +  L YV++ T +G+   AT  
Sbjct: 116 QFHKLPAF-SGDAPIHLLGAVIQPQ--SLWVLGGAALVVLTLYYVMERTLIGKAVVATAA 172

Query: 186 DRKMASILGINTDRVISYVFVIGAAMAALAGVLIT-LNYGTFDFYAGFIIGIKAFTAAVL 244
           +R  A ++G+N   V++  F   AA+ A+AG+LIT +   ++D   G ++ +K F AA+L
Sbjct: 173 NRLAARLVGVNVATVMALAFGGSAAIGAIAGILITPITLTSYD--VGTLLALKGFAAAML 230

Query: 245 GGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVVILIFRPQGLLGRPLVAKV 304
           GG+G+  GA++GG++LG+ ES  +G ++S YKD  +F +++ +L   PQGL+GR  V +V
Sbjct: 231 GGMGNPLGAVIGGLLLGLLESFGAGYVSSTYKDAIAFIVILAVLFVAPQGLVGRRTVERV 290