Pairwise Alignments

Query, 344 a.a., twitching motility protein PilT from Pseudomonas simiae WCS417

Subject, 503 a.a., type II secretion system protein GspE from Vibrio cholerae E7946 ATCC 55056

 Score =  133 bits (334), Expect = 1e-35
 Identities = 105/285 (36%), Positives = 153/285 (53%), Gaps = 30/285 (10%)

Query: 3   ITELLTASVHRGASDLHLSA---GLAPMLRVDGEVWPLEGPVLSPPQ-VADLLSPLLNQH 58
           I  +L  ++  GASD+H+      L+   RVDG +      VL+P + ++ LL   +   
Sbjct: 127 INAMLGEAIKEGASDIHIETFEKTLSIRFRVDGVL----REVLAPSRKLSSLLVSRVKVM 182

Query: 59  QQKDF-ETSLETDFAFELPDVAR---FRANVFRQDRGLSAVFRTIPSEVRSLESLGLG-- 112
            + D  E  +  D    L    R    R +      G   V R +      L+   LG  
Sbjct: 183 AKLDIAEKRVPQDGRISLRIGGRAVDVRVSTMPSSHGERVVMRLLDKNATRLDLHSLGMT 242

Query: 113 ----EVFQRIAQLPRGLVLVTGPTGSGKSTTLAAMIDFLNQHRRHHILTLEDPIEFIHTP 168
               + F+R+ + P G++LVTGPTGSGKSTTL A +  LN   R+ ILT+EDPIEF    
Sbjct: 243 AHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERN-ILTVEDPIEF---- 297

Query: 169 KMALINQRQVH-RDTHGFSVALRSALREDPDVILVGELRDLETIRLALTAAETGHLVFGT 227
            +  I Q QV+ R    F+  LR+ LR+DPDV++VGE+RDLET ++A+ A+ TGHLV  T
Sbjct: 298 DIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMST 357

Query: 228 LHTSSAAKTVDRLVDVFPAGEKAMVRSMLSESLQAVVSQVLVKKI 272
           LHT++A   V RL D+       +   ++S SL  V++Q LV+ +
Sbjct: 358 LHTNTAVGAVTRLRDM------GIEPFLISSSLLGVLAQRLVRTL 396