Pairwise Alignments

Query, 174 a.a., protein PilI from Pseudomonas simiae WCS417

Subject, 520 a.a., chemotaxis protein CheW from Vibrio cholerae E7946 ATCC 55056

 Score = 52.8 bits (125), Expect = 1e-11
 Identities = 27/89 (30%), Positives = 49/89 (55%)

Query: 38  IGFRLGQHWYVAPMGEVAEVLHEPRCTLMPGVKAWVKGVANLRGRLLPVMDLGGFLGLEL 97
           + F LG   +   M EV E++  P    +P   +++ G++NLRG++LPV+ L   L ++ 
Sbjct: 21  VNFMLGDELFALHMQEVEEIIRLPTTFSVPLTPSYLIGLSNLRGQILPVLCLRTLLCMDR 80

Query: 98  SKAGKQRRVLVVEYNDLFVGLLVDEVMGM 126
           + A +  RV+V+      +G  VD V+ +
Sbjct: 81  TSATEATRVIVITIGKTKIGFTVDRVVNV 109



 Score = 44.3 bits (103), Expect = 3e-09
 Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 40  FRLGQHWYVAPMGEVAEVLHEPR-CTLMPGVKAWVKGVANLRGRLLPVMDLGGFLGLELS 98
           F+L +  +   +  V E++  P   + +P    +++GV NLRG +LP++D+     L   
Sbjct: 374 FKLDKEEFGISIHTVQEIIRIPENISRVPKTDDFIEGVINLRGNVLPIVDMRKRFHLPEM 433

Query: 99  KAGKQRRVLVVEYNDLFVGLLVDEV 123
              +++R+LVV +  +  G +VD V
Sbjct: 434 ARHERQRILVVNFEKISTGFIVDSV 458



 Score = 42.0 bits (97), Expect = 2e-08
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 47  YVAPMGEVAEVLHEPRC-TLMPGVKAWVKGVANLRGRLLPVMDLGGFLGLELSKAGKQRR 105
           Y  P+ +  E++  P   T +P  ++ + GV NLRG+ LP++ L    GL         R
Sbjct: 203 YAFPLEDTQEIVRIPEIITKVPLTESAILGVINLRGKTLPLVSLRTLFGLPSISFSDSHR 262

Query: 106 VLVV-----EYNDLFVGLLVDEV 123
           VLVV     E   L VG++VD V
Sbjct: 263 VLVVNISLSEKERLPVGVVVDAV 285