Pairwise Alignments
Query, 1934 a.a., histidine kinase from Pseudomonas simiae WCS417
Subject, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056
Score = 241 bits (616), Expect = 2e-67
Identities = 202/737 (27%), Positives = 333/737 (45%), Gaps = 91/737 (12%)
Query: 1077 LSSLQRDLHTLKGGARMAEIEAIGDLAHELECLYEGLVDRRYSYTAELSHVLMASHERLA 1136
L+++ R H++KGGA + I + H +E + + +++ TA+ L+ S + +
Sbjct: 40 LNTIFRAAHSIKGGAGTFNLHEISEFTHAVETYLDLIRNQKKQLTAQGVDTLLKSCDVIR 99
Query: 1137 LQLEELHHHQPLSDSA--ELIARVRALR--QGSAPAAPAAAPPASGADPELLDIFLEEAA 1192
L+ + ++ ++ A ++AL QG+ A P +S + A
Sbjct: 100 NMLDSREQETAIDEALKQQVGAELQALLADQGADRVMSQAQPVSSNTHTSNMH------A 153
Query: 1193 DILDSSSAALSRWQAE---------PGNRQEVETLLRDLHTLKGGARMVEI--APIGDLA 1241
D + A W+ GN + +LR+L L G +E+ + +LA
Sbjct: 154 DAIAIPDATAQGWRIRFVPHETLFYSGN--DPLRILRELREL-GSEYQIELDHQALPELA 210
Query: 1242 H-ELEFLYEGLSAGLLAPSPELFALLQGCHDRLAQMIDAVADGLPVGSVDKLIERIKTLV 1300
+ E Y + L E + + ++ D V D + L +
Sbjct: 211 EIDPELCYLSWTIRLTGDVSE---------NDVRELFDWVEDECDLHIAPILSDEASA-- 259
Query: 1301 HPSDEPVTPVALPAGKAEAVVDPMADMVKISAELLDDLVNLAGETSIFRGRIEQQVNDAR 1360
H DE P A + V+P+A + DL + + I A
Sbjct: 260 HVEDEQAAPAATLQSNPQTQVEPVA---------IVDLPAVEPPVATVAPVIANPKESAT 310
Query: 1361 IALTEVETTIERMRDQLRRLDT--ETQGRILSRQQAEAERLGYEDFDPLEMDRHSQLQQL 1418
+ ++++ +R + ++D G ++ Q S L +L
Sbjct: 311 NKPAKTDSSVSSIRVDIEKVDNLINLVGELVITQ--------------------SMLTEL 350
Query: 1419 SRALSESASDLLDLKDTLERRNEDAHDLLQQQARINTELQEGLMRTRMVPFERMLPRLKR 1478
S D L++ LLQ + +LQE ++ RM+P R R
Sbjct: 351 GNDFS---------MDKLDKLKAGLAQLLQN----SKDLQENVLNIRMLPMSFAFSRFPR 397
Query: 1479 IVRQVAEELGKDVEFIVGNAEGEMDRNVLERMAAPLEHMLRNAVDHGLESRDARLLAGKP 1538
+VR + LGK V+ + + E+D+ VLER+ PL H++RN +DHG+E D RL GKP
Sbjct: 398 LVRDLCGRLGKKVDLQIQGEQTELDKTVLERIVDPLVHLVRNGIDHGVEMPDVRLAKGKP 457
Query: 1539 EKGRITLDLTHEGGDIVFDMRDDGAGVPLEAVRRKAIKRGLLDP---NQDISDRDVLQFI 1595
E G ITL H+GG I+ ++ DDGAG+ + + RKA+++G+L+P D++D+ ++ I
Sbjct: 458 ETGVITLKAFHQGGSIIVEISDDGAGIDCDKLWRKAVEKGVLEPQTQRSDLTDKQIINLI 517
Query: 1596 LQPGFSTAEKITQISGRGVGMDVVHEEVRQLGGSMVIDSTPGEGVHFRIRLPFTVSVNRA 1655
PGFSTAE+++ ISGRGVGMDVV + +LGG + +DS G G F I LP T+++
Sbjct: 518 FAPGFSTAEQVSDISGRGVGMDVVRRNIEELGGQIEVDSELGRGSRFTISLPLTLAILDG 577
Query: 1656 LMVQCADDQYAIPLNTIEGLVRVLPHELAGHYQQDPPRYEYAGQRYELFYLGDLLHTVSR 1715
+V+ AD Y IPL TI +++ + H Y + + L D L + R
Sbjct: 578 QLVKVADQVYVIPLLTIVESIQINTASVK-HAAGGIELYRLREENIPILRLQDEL-AMGR 635
Query: 1716 PKLLGHYQPVPVLLVQCNERRVAIHVDAMAGTREIVVKGLGPQFAGVQGLSGATILGDGR 1775
G + + V+ RV + VD + +++V+K L +A V G+SGATILGDG
Sbjct: 636 S---GSLEKRLICFVESAGHRVGLLVDDLLDQQQVVIKSLESNYAKVAGISGATILGDGS 692
Query: 1776 VVLIID---LLAHIRAR 1789
V LI+D L+AH R
Sbjct: 693 VSLILDIPGLIAHFMKR 709
Score = 33.5 bits (75), Expect = 1e-04
Identities = 61/264 (23%), Positives = 94/264 (35%), Gaps = 50/264 (18%)
Query: 618 DELREVFLEETDEVLEVLHRNL----PNSADKIAQGEMRRAFHTLKGSGRMVRALVLAEL 673
++LR++F E E LE L L P+ D + RA H++KG ++E
Sbjct: 6 EQLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEF 65
Query: 674 AWAVENLLNRVLERSVTL---GPDV-----------------QQVLDEAV-----ALLPE 708
AVE L+ + + L G D + +DEA+ A L
Sbjct: 66 THAVETYLDLIRNQKKQLTAQGVDTLLKSCDVIRNMLDSREQETAIDEALKQQVGAELQA 125
Query: 709 LIADFAID---DQRQRDEVDALAARAHALASGMPVPAAE-------PHDPML------LE 752
L+AD D Q Q + + HA A +P A+ PH+ + L
Sbjct: 126 LLADQGADRVMSQAQPVSSNTHTSNMHADAIAIPDATAQGWRIRFVPHETLFYSGNDPLR 185
Query: 753 IFRNEAQSHLDSLNHFLHQAAEHVPLQVSDELQRALHTLKGSAYMAGVLPIAELARPLDH 812
I R L L +H L E+ L L + + G + ++ D
Sbjct: 186 ILR-----ELRELGSEYQIELDHQALPELAEIDPELCYLSWTIRLTGDVSENDVRELFDW 240
Query: 813 LTREYKAHRLPLDLDEVELLLEAE 836
+ E H P+ DE +E E
Sbjct: 241 VEDECDLHIAPILSDEASAHVEDE 264
Score = 30.0 bits (66), Expect = 0.001
Identities = 16/64 (25%), Positives = 30/64 (46%)
Query: 1182 ELLDIFLEEAADILDSSSAALSRWQAEPGNRQEVETLLRDLHTLKGGARMVEIAPIGDLA 1241
+L IF E + L++ L + + + + T+ R H++KGGA + I +
Sbjct: 7 QLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEFT 66
Query: 1242 HELE 1245
H +E
Sbjct: 67 HAVE 70