Pairwise Alignments
Query, 1934 a.a., histidine kinase from Pseudomonas simiae WCS417
Subject, 785 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056
Score = 238 bits (608), Expect = 2e-66
Identities = 211/800 (26%), Positives = 353/800 (44%), Gaps = 88/800 (11%)
Query: 1040 ERDDEIVEIFLEEAVDILDSAGQSLKRWLLEPDNAAPLSSLQRDLHTLKGGARMAEIEAI 1099
E D++I++ FL EA +IL+ + L P++ L+++ R HT+KGGA + +
Sbjct: 4 ELDEDILQDFLVEAGEILELLSEQLVELENNPEDRDLLNAIFRGFHTVKGGAGFLALSEL 63
Query: 1100 GDLAHELECLYEGLVDRRYSYTAELSHVLMASHERLALQLEELHHHQPLSDS-AELIARV 1158
+ H E +++ L + + + L ++ + + + Q + +PL + EL+ +
Sbjct: 64 VETCHGAENVFDILRNGQRHVSPSLMDTMLKALDTVNEQFRAVQEREPLQPADPELLDEL 123
Query: 1159 RAL-RQGSAPAAPAAAPPASGADPELLDIFLEEAA-DILD-------------SSSAALS 1203
L + S AA + EL++ +EE D+++ +SS +
Sbjct: 124 HRLSKPASEDEDEAAEAHFDEPEEELVEEIIEEVVEDVVEEAVPNVETEVTASASSGVID 183
Query: 1204 RWQAEPGNRQEVETLLRDLHTLKG---GARMVEI---API-----------GDLAH-ELE 1245
+ + N E E LL +LH KG GA+ + AP GD+ E E
Sbjct: 184 KGSIDDINEDEFEKLLDELHG-KGKAPGAQSPQAPASAPAKAASVTNSDLNGDITDDEFE 242
Query: 1246 FLYEGLSAGLLAPSPELFALLQGCHDRLAQMID----AVADGLPVGS---VDKLIERIKT 1298
L + L PS E A + + A A P G D+ E++
Sbjct: 243 KLLDQLHGKGKGPSIETAAPAAPVTPSTPKATETPKPAAAKSAPGGDDLMTDEEFEKLLD 302
Query: 1299 LVHPSDEPVTPVALPAGKAEAVVDPMADMVKISAELLDDLVNLAGETSIFRGRIEQQVND 1358
+H S + + L P++ K SAE A + + V
Sbjct: 303 ELHGSGKGPSVEELEMATRPVASSPVSSDAKASAEASAPSTKPAAKPVAKPAAAKPAVAK 362
Query: 1359 ARIALTEVETTIERMRDQLRRLDTETQGRILSRQQAEAERLGYEDFDPLEMDRHSQLQQL 1418
A + +D + G Q R+ D + M+ +L +
Sbjct: 363 EEPAKAPAPAAV---KDSDESREVAAAGGAKKAQTESTVRVDTSTLDTI-MNMVGELVLV 418
Query: 1419 SRALSESASDLLDLKDTLERRNEDAHDLLQQQARINTELQEGLMRTRMVPFERMLPRLKR 1478
L L L +E+ + + +LQ +M+TRM P +++ R R
Sbjct: 419 RNRL---------LSLGLNSNDEEMSKAVANLDVVTADLQGAVMKTRMQPIKKVFGRFPR 469
Query: 1479 IVRQVAEELGKDVEFIVGNAEGEMDRNVLERMAAPLEHMLRNAVDHGLESRDARLLAGKP 1538
+VR +A L K+++ + E ++D+N++E +A PL H++RN+VDHG+E D R GK
Sbjct: 470 VVRDLARSLNKEIDLELRGEETDLDKNLVEALADPLIHLVRNSVDHGIEMPDERAKNGKS 529
Query: 1539 EKGRITLDLTHEGGDIVFDMRDDGAGVPLEAVRRKAIKRGLLDPN--QDISDRDVLQFIL 1596
G++ L + EG I + DDGAG+ + +R A+KRG++D + +++++ I
Sbjct: 530 RTGKVILSASQEGDHIQLAIVDDGAGMDPDKLRGIAVKRGIMDEDAANRLTNKECFNLIF 589
Query: 1597 QPGFSTAEKITQISGRGVGMDVVHEEVRQLGGSMVIDSTPGEGVHFRIRLPFTVSVNRAL 1656
PGFS+ EKIT ISGRGVGMDVV + L GS+ IDST G+G I++P T+++ L
Sbjct: 590 MPGFSSKEKITDISGRGVGMDVVKTAINTLNGSIDIDSTMGKGTKITIKVPLTLAILPTL 649
Query: 1657 MVQCADDQYAIPL--------------NTIEGLVRVLPHELAGHYQQDPPRYEYAGQRYE 1702
MV A +A+PL N ++G + ++ E +
Sbjct: 650 MVGVAGHPFALPLASVNEIFHLDLRRTNVVDGQLTIIVRE----------------KSIP 693
Query: 1703 LFYLGDLLHTVSRPKLLGHYQPVPVLLVQCNERRVAIHVDAMAGTREIVVKGLGPQFAGV 1762
LFYL + L + K+ V++VQ +RV + VD + G E+V+K L G
Sbjct: 694 LFYLQNWL-APKKGKVQLRQGHGHVVIVQIGSQRVGLVVDTLIGQEEVVIKPLDKLLQGT 752
Query: 1763 QGLSGATILGDGRVVLIIDL 1782
G+SGATI DG + LI+D+
Sbjct: 753 PGMSGATITSDGHIALILDV 772
Score = 41.2 bits (95), Expect = 6e-07
Identities = 61/273 (22%), Positives = 103/273 (37%), Gaps = 42/273 (15%)
Query: 616 IDDELREVFLEETDEVLEVLHRNLP----NSADKIAQGEMRRAFHTLKGSGRMVRALVLA 671
+D+++ + FL E E+LE+L L N D+ + R FHT+KG + L
Sbjct: 5 LDEDILQDFLVEAGEILELLSEQLVELENNPEDRDLLNAIFRGFHTVKGGAGFLALSELV 64
Query: 672 ELAWAVENLLNRVLERSVTLGPDVQQVLDEAVALLPELIADFAIDDQRQRDEVD-ALAAR 730
E EN+ + + + P + + +A+ + E A+ ++ D L
Sbjct: 65 ETCHGAENVFDILRNGQRHVSPSLMDTMLKALDTVNEQFR--AVQEREPLQPADPELLDE 122
Query: 731 AHALASGMPVPAAEPHDPMLLEIFRNEAQSHLDS-LNHFLHQAAEHVPLQVSDELQRALH 789
H L+ PA+E D A++H D + + E V V +E +
Sbjct: 123 LHRLSK----PASEDED--------EAAEAHFDEPEEELVEEIIEEVVEDVVEEAVPNVE 170
Query: 790 TLKGSAYMAGVLPIAELARPLDHLTREYKAHRLPLDLDEVELLLEAEGLFQRGLRDLDSD 849
T ++ +GV+ K ++ DE E LL+ L +G
Sbjct: 171 TEVTASASSGVID---------------KGSIDDINEDEFEKLLDE--LHGKGKAPGAQS 213
Query: 850 PLAPIKGAEDLINRTQS-----LLDHQLEALLD 877
P AP + T S + D + E LLD
Sbjct: 214 PQAPASAPAKAASVTNSDLNGDITDDEFEKLLD 246