Pairwise Alignments

Query, 1934 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 746 a.a., CheA signal transduction histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  259 bits (662), Expect = 9e-73
 Identities = 224/792 (28%), Positives = 357/792 (45%), Gaps = 114/792 (14%)

Query: 1042 DDEIVEIFLEEAVDILDSAGQSLKRWLLEPDNAAPLSSLQRDLHTLKGGARMAEIEAIGD 1101
            D+EI++ FL EA +IL+   + L      PD+   L+++ R  HT+KGGA    +  + D
Sbjct: 6    DEEILQDFLIEAGEILELLSEQLVALENNPDDTELLNAIFRGFHTVKGGAGFLSLTPMVD 65

Query: 1102 LAHELECLYEGLVDRRYSYTAELSHVLMASHERLALQLEELHHHQPLSDSAE-LIARVRA 1160
            + HE E  ++ L   + S +AEL  +++ + + +     E       S + E L+A ++ 
Sbjct: 66   VCHEAENTFDLLRTGKRSVSAELMDIILQAVDTINSMFAETQAGVEQSPADEGLLANLKL 125

Query: 1161 LRQGS----------------APAAPAAAPPASGADPELLDIFLEEAADILDS--SSAAL 1202
            L  G                  PA PA   PA     EL D+ L++  ++ D   S A +
Sbjct: 126  LSSGGLLPSEQGGASVEAVAETPAEPAVEIPADDGI-ELFDMPLDDGVELFDEPVSDAPV 184

Query: 1203 SRWQAEPG----NRQEVETLLRDLH--------TLKGGARMVEIAPIGDLAH-ELEFLYE 1249
            +    E      +  E E LL  LH        T   G   ++ +   D+   E E L +
Sbjct: 185  TSIAGEGDIDEIDESEFEALLDALHGSGKGPSSTAPAGVAPIQASDSDDITDDEFESLLD 244

Query: 1250 GL--SAGLLAPSPELFALLQGCHDRLAQMIDAVADGLPVGSVDKLIERIKTL-VHPSDEP 1306
             L  S    APS    A +    +  +  +DA  D +     +KL++ +      P  E 
Sbjct: 245  ELHGSGKFQAPS----APIAKVPEPTSPPVDA--DEITDDEFEKLLDELHGAGAGPGSET 298

Query: 1307 VTPVALPAGKAEAVVDPMADMVKISAELLDDLVNLAGETSIFRGRIEQQVNDARIALTEV 1366
              PVA  A KA A   P        + +    V +     + + +   +       + + 
Sbjct: 299  SKPVA-SAAKAPAAPAPNKVATPAPSSVKSQPVEVPAPKPVVKEKAAAKAPATN--MPQA 355

Query: 1367 ETTIERMRDQLRRLDTETQGRILSRQQAEAERLGYEDFDPLEMDRHSQLQQLSRALSESA 1426
            ETT+        R+DT                            R  Q+  +   L    
Sbjct: 356  ETTV--------RVDTA---------------------------RLDQIMNMVGELVLVR 380

Query: 1427 SDLLDLKDTLERRNEDAHDLLQQQARINTELQEGLMRTRMVPFERMLPRLKRIVRQVAEE 1486
            + LL L   + R +ED    L     +  +LQ  +M+TRM P +++  R  R+VR +A  
Sbjct: 381  NRLLSLG--ISRDDEDMSKALANLDLVTADLQGAVMKTRMQPIKKVFGRFPRVVRDLARS 438

Query: 1487 LGKDVEFIVGNAEGEMDRNVLERMAAPLEHMLRNAVDHGLESRDARLLAGKPEKGRITLD 1546
            L K+++  +   + ++D+N++E +A PL H++RN+VDHG+E  D R   GK   G ITL 
Sbjct: 439  LNKEIDLRMIGEDTDLDKNLVEALADPLVHLVRNSVDHGIEMPDEREANGKSRTGTITLS 498

Query: 1547 LTHEGGDIVFDMRDDGAGVPLEAVRRKAIKRGLLDPN--QDISDRDVLQFILQPGFSTAE 1604
             + EG  I+  + DDGAG+  E +++ AIKRG+LD +    +SD +    I  PGFST  
Sbjct: 499  ASQEGDHILLKIEDDGAGMDPEKLKQIAIKRGVLDEDAAARMSDEEAYNLIFAPGFSTKV 558

Query: 1605 KITQISGRGVGMDVVHEEVRQLGGSMVIDSTPGEGVHFRIRLPFTVSVNRALMVQCADDQ 1664
            +I+ ISGRGVGMDVV   + QL G++ IDS  G+G    I++P T+++   LMV+ A   
Sbjct: 559  EISDISGRGVGMDVVKTRITQLNGTVHIDSLKGKGTCLEIKVPLTLAIMPTLMVEVAQQV 618

Query: 1665 YAIPL--------------NTIEGLVRVLPHELAGHYQQDPPRYEYAGQRYELFYLGDLL 1710
            +A+PL              N ++G + V+  E A                  LFYL   L
Sbjct: 619  FALPLSSVSEIFHLDLTKTNVVDGQLTVIVREKA----------------VPLFYLEHWL 662

Query: 1711 HTVSRPKLLGHYQPVPVLLVQCNERRVAIHVDAMAGTREIVVKGLGPQFAGVQGLSGATI 1770
               +     G  Q   V++VQ    ++   VD++ G  E+V+K LG    G  G++GATI
Sbjct: 663  SRKAVSFKHGDKQHGHVVIVQLGTMQIGFVVDSLIGQEEVVIKPLGTLLHGTPGMAGATI 722

Query: 1771 LGDGRVVLIIDL 1782
              DG + LI+D+
Sbjct: 723  TSDGGIALILDV 734



 Score = 41.2 bits (95), Expect = 5e-07
 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 7/134 (5%)

Query: 616 IDDELREVFLEETDEVLEVLHRNLP----NSADKIAQGEMRRAFHTLKGSGRMVRALVLA 671
           +D+E+ + FL E  E+LE+L   L     N  D      + R FHT+KG    +    + 
Sbjct: 5   VDEEILQDFLIEAGEILELLSEQLVALENNPDDTELLNAIFRGFHTVKGGAGFLSLTPMV 64

Query: 672 ELAWAVENLLNRVLERSVTLGPDVQQVLDEAVALLPELIADF-AIDDQRQRDEVDALAAR 730
           ++    EN  + +     ++  ++  ++ +AV  +  + A+  A  +Q   DE   L A 
Sbjct: 65  DVCHEAENTFDLLRTGKRSVSAELMDIILQAVDTINSMFAETQAGVEQSPADE--GLLAN 122

Query: 731 AHALASGMPVPAAE 744
              L+SG  +P+ +
Sbjct: 123 LKLLSSGGLLPSEQ 136