Pairwise Alignments

Query, 1934 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 920 a.a., chemotaxis protein CheA from Methanococcus maripaludis S2

 Score =  231 bits (588), Expect = 4e-64
 Identities = 144/463 (31%), Positives = 253/463 (54%), Gaps = 38/463 (8%)

Query: 1322 DPMADMVKISAELLDDLVNLAGETSIFRGRIEQQVNDARIALTEVETTIERMRDQLRRLD 1381
            D + +++  + E+ + LVN+  +T+  +              T+++ T++          
Sbjct: 491  DDIKEIISKTPEITEFLVNVQKDTNNLKDN------------TKIKNTVDAT-------- 530

Query: 1382 TETQGRILSRQQAEAERLGYEDFDPLEMDRHSQLQQLSRALSESASDLLDLKDTLERRNE 1441
            ++ Q    S ++++  R+  E  D L M+   ++  ++RA     +   DLK+       
Sbjct: 531  SKKQAENSSSKKSQTVRVNIEKLDKL-MNLVGEVV-INRANFTQIATKYDLKEL------ 582

Query: 1442 DAHDLLQQQARINTELQEGLMRTRMVPFERMLPRLKRIVRQVAEELGKDVEFIVGNAEGE 1501
              H+ + +   + TELQE +M  RM+P   +  R  R VR  A+ L K+++F +  ++ E
Sbjct: 583  --HNAVGRLNMLATELQEEVMGMRMIPVAFVFNRFPRTVRDTAKALDKEIDFEIEGSDIE 640

Query: 1502 MDRNVLERMAAPLEHMLRNAVDHGLESRDARLLAGKPEKGRITLDLTHEGGDIVFDMRDD 1561
            +DR VL+ +A PL H++RN++DHG+E  D R+  GKPEKG + L  T +   +   +RDD
Sbjct: 641  LDRTVLDELAEPLTHLIRNSLDHGIEHADERIKLGKPEKGILKLIATRQRDRVNIIIRDD 700

Query: 1562 GAGVPLEAVRRKAIKRGLL--DPNQDISDRDVLQFILQPGFSTAEKITQISGRGVGMDVV 1619
            G G+  EA+R+KA ++GL   +  + ++D + +  I  PGFSTAE ++ +SGRGVGMDVV
Sbjct: 701  GKGIDPEAMRKKAFEKGLYSKEEAEKLTDNEAVNVIFHPGFSTAEVVSDVSGRGVGMDVV 760

Query: 1620 HEEVRQLGGSMVIDSTPGEGVHFRIRLPFTVSVNRALMVQCADDQYAIPLNTIEGLVRVL 1679
              ++  LGGS+ ++S  G+G    + LP T+++ + L+++  +  YA+PL ++  ++ V 
Sbjct: 761  RSKIESLGGSVTVNSEVGKGTEITLHLPLTMAIIQTLLIRLNEHIYALPLTSVLDVISVE 820

Query: 1680 PHELAGHYQQDPPRYEYAGQRYELFYLGDLLHTVSRPKLLGHYQPVPVLLVQCNERRVAI 1739
              ++     Q+     Y      + +L D L+T            + V++V+ N+ +V +
Sbjct: 821  KEQIKNLEGQE--AIIYRNHILPVIWLKDALNTSG----FSDSDDLYVVVVEKNKGKVGM 874

Query: 1740 HVDAMAGTREIVVKGLGPQFAGVQGLSGATILGDGRVVLIIDL 1782
             +D + G  EIVVK L      + GL+GATILGDGRV LI+DL
Sbjct: 875  ILDEVIGRDEIVVKPLTGILKNINGLAGATILGDGRVALILDL 917



 Score = 58.5 bits (140), Expect = 4e-12
 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 1185 DIFLEEAADILDSSSAALSRWQAEPGNRQEVETLL-RDLHTLKGGARMVEIAPIGDLAHE 1243
            ++F+ EA + L S +  +   +  P + + +  ++ R  HTLKG AR +    I  L H 
Sbjct: 9    ELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHISSLTHH 68

Query: 1244 LEFLYEGLSAGLLAPSPELFALLQGCHDRLAQMIDAVADGLPVGS--VDKLIERIKTL 1299
            +E + + +  G +  +PE+  LL  C D L  M+  V+DG    S  VD L+E IK++
Sbjct: 69   MEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVDVDSLVEVIKSV 126



 Score = 46.6 bits (109), Expect = 2e-08
 Identities = 67/343 (19%), Positives = 137/343 (39%), Gaps = 50/343 (14%)

Query: 1043 DEIVEIFLEEAVDILDSAGQSLKRWLLEP-DNAAPLSSLQRDLHTLKGGARMAEIEAIGD 1101
            ++  E+F+ EA + L S  Q++      P D+   ++ + R  HTLKG AR    E I  
Sbjct: 5    EQYKELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHISS 64

Query: 1102 LAHELECLYEGLVDRRYSYTAELSHVLMASHERLALQLEELHHHQPLS--DSAELIARVR 1159
            L H +E + + + D +     E+  +L    + L   + E+   +  +  D   L+  ++
Sbjct: 65   LTHHMEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVDVDSLVEVIK 124

Query: 1160 ALRQGSAPAAPAAAPPASGADPELLDIFLEEAADILDSSSAALSRWQAEPGNRQEVETLL 1219
            ++++             SG + +      E++ D  D +  A          +Q  E  +
Sbjct: 125  SVKE----------KYLSGENSK------EDSLDYSDPNEVA---------KKQVEEKTV 159

Query: 1220 RDLHTLKGGARMVEIAPIGDLAHELEFLYEGLSAGLLAPSPE-LFALLQGCHDRLAQMID 1278
             ++ +  G   +V  + I         L EG S   +   PE L ++L   H+  + ++ 
Sbjct: 160  NNISSNSGSIHLVNESSI--------ILIEGQSNNSVVEKPENLDSVLNQMHESASALL- 210

Query: 1279 AVADGLPVGSVDKLIERIKTLVHPSDEPVTPVALPAGKAEAVVDPMADMVKISAELLDDL 1338
             + D L  G +   ++ I  L +              +  A+ +    ++K +   +  +
Sbjct: 211  TILDALEYGELKDTVKNIDELSNAM----------LNETVAITENSLSVLKSALSTMQQI 260

Query: 1339 VNLAGETSIFRGRIEQQVNDARIALTEVETTIERMRDQLRRLD 1381
              +    S  R + +    + +I+LT  ET  E + D+   LD
Sbjct: 261  AKVVETGS--RAKCDYSELNEKISLTLSETVGESVEDKEIILD 301



 Score = 46.6 bits (109), Expect = 2e-08
 Identities = 27/116 (23%), Positives = 64/116 (55%), Gaps = 7/116 (6%)

Query: 618 DELREVFLEETDEVLEVLHRNL------PNSADKIAQGEMRRAFHTLKGSGRMVRALVLA 671
           ++ +E+F+ E +E L+ L++N+      P  +++I     R A HTLKGS R +    ++
Sbjct: 5   EQYKELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSA-HTLKGSARTLGFEHIS 63

Query: 672 ELAWAVENLLNRVLERSVTLGPDVQQVLDEAVALLPELIADFAIDDQRQRDEVDAL 727
            L   +E++L+ + +  + + P++  +L + +  L  ++++ +  +     +VD+L
Sbjct: 64  SLTHHMEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVDVDSL 119



 Score = 40.8 bits (94), Expect = 8e-07
 Identities = 62/311 (19%), Positives = 126/311 (40%), Gaps = 38/311 (12%)

Query: 752  EIFRNEAQSHLDSLNHFLHQAAEHVPL---QVSDELQRALHTLKGSAYMAGVLPIAELAR 808
            E+F  EA+ HL SLN  + +  E+ P    ++ + + R+ HTLKGSA   G   I+ L  
Sbjct: 9    ELFMTEAEEHLQSLNQNMVEL-ENCPEDSERIINMIFRSAHTLKGSARTLGFEHISSLTH 67

Query: 809  PLDHLTREYKAHRLPLDLDEVELLLEAEGLFQRGLRDLDSDPLAPIKGAEDLINRTQSLL 868
             ++ +    +  ++ ++ + V+LL +          D     ++ +   ED    T   +
Sbjct: 68   HMEDILDYIRDGKIKVNPEIVDLLFKC--------LDALETMVSEVSDGED---TTSVDV 116

Query: 869  DHQLEALLDVRIKRDPQLIANFLAQGMDILLDAENLLRRWQQHPGERQELTALLDELTTL 928
            D  +E +  V+ K                 L  EN       +    +     ++E T  
Sbjct: 117  DSLVEVIKSVKEK----------------YLSGENSKEDSLDYSDPNEVAKKQVEEKTVN 160

Query: 929  GEGAHVADLHAIDALCEALLDLYGAVEESSLAVSERFFHEAEQAHE---ALISMLDQLAA 985
               ++   +H ++    +++ + G    S +   E       Q HE   AL+++LD L  
Sbjct: 161  NISSNSGSIHLVNE--SSIILIEGQSNNSVVEKPENLDSVLNQMHESASALLTILDALEY 218

Query: 986  GQEISPAPARVEALRELLDE--ALDPSATGLIKSDGSRVLSVSELGAATQQLGHETERDD 1043
            G+         E    +L+E  A+  ++  ++KS  S +  ++++     +   +    +
Sbjct: 219  GELKDTVKNIDELSNAMLNETVAITENSLSVLKSALSTMQQIAKVVETGSRAKCDYSELN 278

Query: 1044 EIVEIFLEEAV 1054
            E + + L E V
Sbjct: 279  EKISLTLSETV 289