Pairwise Alignments

Query, 626 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

Subject, 503 a.a., ATP-dependent RNA helicase from Sinorhizobium meliloti 1021

 Score =  367 bits (941), Expect = e-106
 Identities = 222/536 (41%), Positives = 310/536 (57%), Gaps = 45/536 (8%)

Query: 2   SFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
           +F  LGLSE +V  + A G+ +PTP+Q +AIP VL+  DL+  AQTGTGKT  F LP++E
Sbjct: 3   TFKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIE 62

Query: 62  RLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMNP 121
           +L  +G     +R  PR  R LVL PTREL  Q+  + KL+ +        + GGV +N 
Sbjct: 63  KLVADG-----RRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINK 117

Query: 122 QVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARL 181
           Q + ++RGVD+LVA PGRLLDL  + +V L+    LVLDEAD+MLD+GF+HD++K+   +
Sbjct: 118 QTEQLARGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLV 177

Query: 182 PAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRV-FRLAASHKRALL 240
           P  RQ LLFSAT  + I  LAG+ L +P ++EV+PP    +++EQ V F      K  +L
Sbjct: 178 PKNRQTLLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTIL 237

Query: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSV 300
              +TA      L+F+RTKHGA +L ++LD  G  A +IHGNKSQ  R +AL  F+ G +
Sbjct: 238 KQTLTANPDGLSLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEI 297

Query: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           R+LVATD+AARG+DI  + HV N++LP V + YVHRIGRT R GR G AI+  APDE +L
Sbjct: 298 RVLVATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRL 357

Query: 361 LKSIERMTKQKIADGDLMGFDASAVEAEKPEARERPDV-RNPRNPRGPKGDG-PNGGGGG 418
           L+ IE+          LMG   +    E P  + RP   R  R    P+G+G P G G G
Sbjct: 358 LRDIEK----------LMGIQIAVASGEAPADQARPSKGRGGRGNGQPRGNGQPRGNGAG 407

Query: 419 GGRRDKGKDKGKEKSASG--RGERPAREQKPREGTPAREQRQPSQPPRAAADRAPDEFLD 476
             +    +D+ + ++A+G   G+   R+++  E    R+QR     P   AD  P+    
Sbjct: 408 QRQGGPRRDRPQRQAAAGGFAGDELLRDERSHE---RRDQRAAGHGP---ADGRPE---- 457

Query: 477 DDVDNFGNRVDYVPQAKPAQGRGRRPGAPAQGAGAGAPRGGQPQGGRQNGPRNSSG 532
                 G+R         AQ    RPG   Q A  G+ + G+  GG  N P+ + G
Sbjct: 458 ------GHR------NHKAQKHHGRPG--PQQARRGSEQSGERNGG-GNRPQRADG 498



 Score = 37.7 bits (86), Expect = 1e-06
 Identities = 34/116 (29%), Positives = 43/116 (37%), Gaps = 20/116 (17%)

Query: 491 QAKPAQGRGRRPGAPAQGAGAGAPRGGQPQGGRQNGPRNSSGGTTGTPPAKRNGPRNGAP 550
           QA+P++GRG        G G G PRG        NG    +G        +R+ P+  A 
Sbjct: 380 QARPSKGRG--------GRGNGQPRG--------NGQPRGNGAGQRQGGPRRDRPQRQAA 423

Query: 551 RDGQARREDSRSNNRRPARDDQQRSSEPAVQNPRGGPAPKIIHKESKADRFPTPEQ 606
             G A  E  R       RD +     PA   P G       HK  K    P P+Q
Sbjct: 424 AGGFAGDELLRDERSHERRDQRAAGHGPADGRPEGHRN----HKAQKHHGRPGPQQ 475