Pairwise Alignments

Query, 263 a.a., amino acid ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 269 a.a., amino acid ABC transporter (RefSeq) from Shewanella loihica PV-4

 Score = 58.5 bits (140), Expect = 1e-13
 Identities = 52/219 (23%), Positives = 88/219 (40%), Gaps = 9/219 (4%)

Query: 24  KLRIVTEP-WAPYVYDDNGTMRGLDYETTAIVFQRLGVEVQWQFLPWKRCLAMLDQGQAD 82
           K+++  E  WAP+  D  G  +GL +      F R+ V+V    + + R + M  QG  D
Sbjct: 46  KVKLAAEDNWAPFA-DPYG--KGLSHRLVKQAFSRVNVDVDSLVVSYARGVVMTKQGIVD 102

Query: 83  GALDIFHSHERDALLLYPSEPLSDVEFVLFYANERPHPVQGLEDL---RGLTVGTSPGYL 139
           G  ++    +     ++   PL       FY N   HP+Q  +     +GL VG   GY 
Sbjct: 103 GVFNLHKERKTQEEFVFGQIPLFTTS-ASFYQNNA-HPLQAEDKWHLPQGLLVGIIKGYE 160

Query: 140 YGADFSDSALFNHEPAPSHEANFGKLMLGRIDLVITDRRVGQHVIKALGLEGKVSQAPAV 199
           YG + S           +H      L+L RID  I    V    +  +G+   +S++   
Sbjct: 161 YGDELSQLKQLRLVEVDNHNQLINLLLLNRIDAAIMYDEVANQYLGQMGVGKVISRSVHN 220

Query: 200 VSRQQQFLAVRRGAGMDLLVQRFAAELKRFKQEPAYSAL 238
            +        ++     L   +    LK  KQ+ +Y ++
Sbjct: 221 HTGDLYVAFSKQRPNAQLFADKLDLGLKALKQDGSYQSI 259