Pairwise Alignments

Query, 263 a.a., amino acid ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 265 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 44.7 bits (104), Expect = 2e-09
 Identities = 49/240 (20%), Positives = 93/240 (38%), Gaps = 9/240 (3%)

Query: 12  LFTCLSLAAYG------EKLRIVTEPWAPYVYDDNGTMRGLDYETTAIVFQRLGVEVQWQ 65
           L  C+SL   G        +R+VTE W P  ++ +G   G   E   ++   LG +   +
Sbjct: 12  LLLCMSLGYSGLVFAVTAPVRLVTEAWPPMSFEQDGVPTGFGVELVNMLQVSLGQQQSIE 71

Query: 66  FLPWKRCLAMLDQGQADGALDIFHSHERDALLLYPSEPLSDVEFVLFYANERPHPVQGLE 125
            LPW R  ++              S ER+    +   P++  +  L+   +    +  L 
Sbjct: 72  VLPWARAYSIASTTPNVLLFATSISDERETHFDFIG-PIATSKITLYAKADDSININQLS 130

Query: 126 DLRGLTVGTSPGYLYGADFSDSALFNHEPAPSHEANFGK-LMLGRIDLVITDRRVGQHVI 184
           D+    +        GA        N     S      K L+  R+ L        +H++
Sbjct: 131 DVNAAGIVGVYRESVGAQLLQQQGVNALLVASFPQQSAKQLLFSRVRLWCQADLAVKHIL 190

Query: 185 KALGLEGKVSQAPAVVSRQQQFLAVRRGAGMDLLVQRFAAELKRFKQEPAYSALSAKYGG 244
           + +G +    +    ++  + +LA  +G   +  VQR+  EL++ K+   ++ L  K+ G
Sbjct: 191 EEVGAKESAIKPVYTLAEIRLYLAFSKGTPAE-TVQRWQTELEKRKESGEFARLYQKWFG 249