Pairwise Alignments

Query, 295 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 483 a.a., formate transporter FocA from Vibrio cholerae E7946 ATCC 55056

 Score = 51.6 bits (122), Expect = 4e-11
 Identities = 56/250 (22%), Positives = 101/250 (40%), Gaps = 41/250 (16%)

Query: 59  LTMGLSLMAMGLLNSRLPEGEAFKVIASFGYCAGFLAVILARQQLFTENTLTAVLPVMSK 118
           +T G +    GL  SRL  G AF +        G + +++   +LFT + L+++     +
Sbjct: 57  VTTGSASAGWGL--SRLAGGVAFSM--------GLILIVICGGELFTSSVLSSISWANRE 106

Query: 119 PTLGNAGRLLRLWTVVLVGNLCGTLLVAYVMLHLPIF---DTKTDLAFLEIGRKIMENDA 175
            + G   ++L +W  V VGN  G + +  ++    ++   + +  L  L I +  + +  
Sbjct: 107 ISFG---KMLSIWGKVYVGNFIGAIFLLLLVTAAGLYQLDEGQWGLNALNIAQHKLHHTT 163

Query: 176 GQMFAKGIISGWMIATMVWMIPSMESA--KMFIIILITYLMALGDFTHIVVGSAEVSYLV 233
            Q FA GI+   ++   +W+  S  +A  K  + I+   +     F H V     V   +
Sbjct: 164 VQAFALGILCNLLVCLAIWLTFSSANAMTKAAMTIMPVAMFVSSGFEHCVANMFMVPLGI 223

Query: 234 FAGELAWKDFW-----------------LVFAG--PTLAGNIIGGSFIFALISHAQIRSE 274
                A   FW                  + A   P   GNI+GG+ +  L + +  R  
Sbjct: 224 VIQNFAPDSFWQQVGVTASQYSDLNVTQFITANLIPVTLGNIVGGAVLVGLANWSIYRR- 282

Query: 275 GSLPDKKAAD 284
              P  KAA+
Sbjct: 283 ---PQLKAAN 289