Pairwise Alignments

Query, 295 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 280 a.a., formate transporter FocA from Vibrio cholerae E7946 ATCC 55056

 Score = 73.6 bits (179), Expect = 5e-18
 Identities = 62/271 (22%), Positives = 116/271 (42%), Gaps = 34/271 (12%)

Query: 16  EQHDVDKNQPPRAAVLHEIIRTQGDQELERSVAALWWSALAAGLTMGLSLMAMGLLNSR- 74
           E +  D   PP+ A   E     G+ + +++    +  A++AG+ +G++ +   ++ +  
Sbjct: 2   EHNQFDSLLPPQMA---ERAAITGEGKAKKAAYKSFLLAISAGIQIGIAFVFYTVVTTGA 58

Query: 75  --LPEGEAFKVIASFGYCAGFLAVILARQQLFTENTLTAVLPVMSKPTLGNAGRLLRLWT 132
             +P G   K++    +  G + V++   +LFT + L  V     K +      L+R WT
Sbjct: 59  HDMPYGVT-KLLGGLAFSLGLILVVITGGELFTSSVLILVAKASGKISWKE---LVRNWT 114

Query: 133 VVLVGNLCGTLLVAYVMLHLPIF---DTKTDLAFLEIGRKIMENDAGQMFAKGIISGWMI 189
           VV  GNLCG++++ ++ML    F     +  L  + I +  + +   Q FA G++   ++
Sbjct: 115 VVYFGNLCGSIILVFIMLATRQFMEDGGQLGLNAMAISQHKLHHTFLQAFALGLMCNILV 174

Query: 190 ATMVWMIPSMESA--KMFIIILITYLMALGDFTHIVVGSAEVSYLVFAGELAWKDFWLVF 247
              VWM  S  S   K+ ++IL   +     F H +    +V   +     A + FW + 
Sbjct: 175 CLAVWMTFSARSLTDKVMVLILPVAMFVSSGFEHCIANMFQVPMAIGIKYFAPESFWAMT 234

Query: 248 AG-------------------PTLAGNIIGG 259
                                P   GNI+GG
Sbjct: 235 GANIAQYADLNFVNFIVNNLIPVTLGNIVGG 265