Pairwise Alignments

Query, 295 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 324 a.a., formate transporter, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 59.7 bits (143), Expect = 9e-14
 Identities = 56/249 (22%), Positives = 104/249 (41%), Gaps = 42/249 (16%)

Query: 82  KVIASFGYCAGFLAVILARQQLFTENTLTAVLPVMSKPTLGNAGRLLRLWTVVLVGNLCG 141
           +++    +  G + V++   +LFT + L++V     + T      LL+ WT V +GN  G
Sbjct: 80  RLVGGIAFSLGLILVVICGGELFTSSVLSSVAWAQKQVT---TSELLKCWTRVYLGNFVG 136

Query: 142 TLLVAYVMLHLPIFDT---KTDLAFLEIGRKIMENDAGQMFAKGIISGWMIATMVWM-IP 197
            +L+  +++   +++       L  L++ +  + +   Q F+ GI+   ++   +WM   
Sbjct: 137 AMLMVGLIMAAGLYELDGGNWGLNALKVAQHKLHHTWIQAFSLGILCNMLVCLGIWMTFA 196

Query: 198 SMES-AKMFIIILITYLMALGDFTHIVVGSAEVSYLVFAGELAWKDFW------------ 244
           S ES  K  ++IL   +     F H +     V + +    +A  +F+            
Sbjct: 197 SRESLTKAILLILPVAMFVSSGFEHSIANLFMVPFGITIQAVASPEFFASLGVTQEQFAD 256

Query: 245 -----LVFAG--PTLAGNIIGGSFIFAL----ISHAQIRSEGSLPDKKA-------ADPR 286
                 +F    P   GNI+GG  I  L    I   QI    +LPD +        A P 
Sbjct: 257 LTVANFIFKNLIPVTLGNIVGGGVIVGLGYWWIEQGQI----ALPDPQKSHQPHFFASPL 312

Query: 287 HPQQISKDQ 295
           H +++ K Q
Sbjct: 313 HTEKVKKSQ 321