Pairwise Alignments

Query, 419 a.a., sodium:proton antiporter from Pseudomonas simiae WCS417

Subject, 574 a.a., sodium/hydrogen exchanger family/TrkA domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 95.9 bits (237), Expect = 3e-24
 Identities = 112/408 (27%), Positives = 185/408 (45%), Gaps = 41/408 (10%)

Query: 5   VAAFICLTTLLTYVNFRFIGLPPTIGVMVTALVFSL-ILQGLSVLGYPGLEERIQQLIGQ 63
           + +F  +  LLT V+     +   +G+ +  +  ++ IL G    G  G+      L   
Sbjct: 6   INSFFLIGALLTAVSVLLSPMSSRLGIPILLIFLAVGILAGED--GPGGI------LFDD 57

Query: 64  IDFGDLLMNWMLSFLLFAGALHVNLNDLRSYRWPIGLLATFGVLIATVVIGSLAYYIFAL 123
                L+ N+ L+ +L  G +   +   R   WP   LATFGV I T + G +A ++F L
Sbjct: 58  YSTAYLVSNFALAIILLDGGMRTRVASFRVALWPALSLATFGVAITTSITGVMAAWLFDL 117

Query: 124 FGWHVSFLYCLLFGALISPTDPIAVLGVLRTANASKPLKTTIVGESLFNDGTAVVVFTVL 183
                 +L  LL GA++  TD  AV  +L+  + ++ +  T+  ES  ND  AV +   L
Sbjct: 118 -----HWLQGLLVGAIVGSTDAAAVFSLLKGRSLNERVGATLEIESGSNDPMAVFLTVTL 172

Query: 184 LGI-AQLGETPTVGATAMLFAHEAIGGVAFGGLIGYLVYLMIKSIEQHQIEVMLTLALVI 242
           + I A +G   +     + F  +   GV  G   G+L++   K +   ++   L   LV+
Sbjct: 173 IAILANVGAELSASFMLISFIKQFGLGVLLGLGGGWLLW---KLVNVSKLAEGLYSILVL 229

Query: 243 GGSAM----ATELHVSAPIAMVVAGLIIGN---LGRKLAMNDMTRRYLDGF-WELLDDML 294
            G  M    + +L  S  +++ + GL +GN    GR   +N      LDG  W     M 
Sbjct: 230 SGGLMIYATSNKLGGSGILSIYLVGLFLGNKPTRGRHAILN-----VLDGMTWVSQIGMF 284

Query: 295 NALLFALIGMELLLLPFNWLHVLAASLLAVAILLSRLLTVAPAILLLRRWRTVPRGTIRI 354
             L   L   +LL +   WL  LA  L    IL +R L V  ++L  + + +  R     
Sbjct: 285 LVLGLLLTPSDLLDI---WLPGLA--LAFGMILFARPLAVWLSLLPFKSFGSRDRW---F 336

Query: 355 LTWGGLRGGVSVALALALPLG--PERDLLLSITYIVVLSSILLQGLSI 400
           ++W GLRG V + LA+   +   P   L  ++ + VV+ S+L+QG S+
Sbjct: 337 ISWVGLRGAVPIILAVFPMMAGLPGAQLYFNLAFFVVIVSLLVQGASL 384