Pairwise Alignments

Query, 419 a.a., sodium:proton antiporter from Pseudomonas simiae WCS417

Subject, 389 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  219 bits (559), Expect = 9e-62
 Identities = 142/374 (37%), Positives = 203/374 (54%), Gaps = 23/374 (6%)

Query: 5   VAAFICLTTLLTYV-NFRFIGLPPTIGVMVTALVFSLILQ------GLSVLGY--PGLEE 55
           +   +C   L+T V + R   L  T+ +   AL  SL+L       G  V GY   GLE+
Sbjct: 6   ILCILCALALVTSVASSRLHKLQETVAITALALGMSLLLLLGGKALGGHVYGYFVAGLEK 65

Query: 56  RIQQLIGQIDFGDLLMNWMLSFLLFAGALHVNLNDLRSYRWPIGLLATFGVLIATVVIGS 115
                   +DF  LL+N ML FLLFAGAL + L  LR  +W I +LA    L++T ++G 
Sbjct: 66  --------LDFQALLLNGMLGFLLFAGALQIRLKILRHQKWEILILAFVSTLLSTFIVGG 117

Query: 116 LAYYIFALFGWHVSFLYCLLFGALISPTDPIAVLGVLRTANASKPLKTTIVGESLFNDGT 175
           L YYI  + G  ++  +CLLFGALISPTDPIAVL +L+   A + +   + GESLFNDG 
Sbjct: 118 LLYYIAPMLGLPLALSHCLLFGALISPTDPIAVLAILKKMGAPEDIAIQVEGESLFNDGI 177

Query: 176 AVVVFTVLLGIAQLGETPTVGATAMLFAHEAIGGVAFGGLIGYLVYLMIKSIEQHQIEVM 235
            +V+F  +  +A   E  T    ++LF  EA+GGV +G ++G L++   +  E+    ++
Sbjct: 178 GLVIFVAISHLAFSTEPLTFSQISLLFVQEALGGVVYGAVLGVLLHHFFRYCEEETQLML 237

Query: 236 LTLALVIGGSAMATELHVSAPIAMVVAGLIIGNLGRKLAMNDMTRRYLDGFWELLDDMLN 295
           +TL +   G  +A  L VS P+AMV AG+IIGN           R  L  FW L++   N
Sbjct: 238 VTLLIPTAGYVIAEVLGVSGPLAMVSAGMIIGNYSVPKYFVRHERVKLYTFWSLIESFFN 297

Query: 296 ALLFALIGMELLLLPFN---WLHVLAASLLAVAILLSRLLTVAPAILLLRRWRTVPRGTI 352
           ALLF L+G+ LLL+ F    W  +L A  L   +L +R ++V    +  R  ++      
Sbjct: 298 ALLFLLLGLLLLLVTFKAPLWWFMLVAIPL---VLTARAVSVFLPYIGFRMVKSYNPYAE 354

Query: 353 RILTWGGLRGGVSV 366
            IL WGGLRGG  +
Sbjct: 355 SILIWGGLRGGAGL 368