Pairwise Alignments

Query, 554 a.a., NAD-dependent DNA ligase LigB from Pseudomonas simiae WCS417

Subject, 795 a.a., NAD-dependent DNA ligase LigA from Azospirillum brasilense Sp245

 Score =  147 bits (371), Expect = 2e-39
 Identities = 159/594 (26%), Positives = 262/594 (44%), Gaps = 88/594 (14%)

Query: 24  DTARAQVNTLTEQIRLWDDSYHRLNQSPVSDELYDQAHQRLTHWRRCFPESPPKPDNPL- 82
           + A+A++  L ++I   D  YH+ ++  +SD  YD   +R       +PE   + D+P  
Sbjct: 22  EQAQAELAALAQEIAHHDRLYHQQDKPEISDAAYDALVRRNNGIEARYPELR-RADSPSL 80

Query: 83  ------ASSRGTLRHPIAHTGLEKLLDEQA-------VGAWLSTRQDVWIQ----PKVDG 125
                 A++   +RH +    L    + +        V  +L    D  ++    PK+DG
Sbjct: 81  RVGAAPAAAFRKVRHALPMLSLGNAFEPEEAHEFVARVRRFLGLSDDAPLEFVAEPKIDG 140

Query: 126 VAVTLVYRQGRLRQVISRGDGLMGHDWSASARRIPGIVQQLPEPIDLVLQ--GELYWHLD 183
           ++ +L Y  GRL    +RGDG  G D +A+ R I  + Q L  P   VL+  GE+Y + D
Sbjct: 141 LSCSLRYENGRLVLAATRGDGTEGEDVTANVRTIKDVPQALEAPFPAVLEVRGEVYMNRD 200

Query: 184 DHVQS----ANGG----LNARSKVAGLMNRLELSDADAAGIGLFVWAWPEGPGSFTERLA 235
           D +      A  G     N R+  AG + + +     +  +  F +A     G  +E +A
Sbjct: 201 DFLAMNRAYAERGEDLFANPRNAAAGSLRQKDSKITASRPLCFFGYAL----GELSEPIA 256

Query: 236 --------ALARWGFTDSRRYSQPIRDIAEA--THWRAYWYNHP-LPFASDGVV--LHQA 282
                    L  WGF+ +R  +  + D AEA  TH+R        LPF  DGVV  ++  
Sbjct: 257 DTQWGIRERLRGWGFSLNRPAN--LCDGAEALLTHYRKIGEERSALPFDIDGVVYKVNSL 314

Query: 283 QRPPARRWKASEPYWAVAWKYPAAKALALVRNVRFKIGRTGRITPMLELEPVQLDDRQIS 342
           +      + +  P WA+A K+PA +A   ++ +  ++GRTG +TP+ ELE + +    +S
Sbjct: 315 ELQQRLGFVSRAPRWAIAHKFPAEQAQTRLKGITIQVGRTGALTPVAELEDITVGGVVVS 374

Query: 343 RVSAGSLKRWQTLDIRPGDQVSISLAGQVIPRLDEVILRNAHRADLAAPDPRDFHALSCW 402
           R +  +       D+R GD V++  AG VIP++  V+     R D A P     H   C 
Sbjct: 375 RATLHNEDEIVRKDVRIGDLVTVQRAGDVIPQIVGVV--EGQRPDDAVPYVFPDHCPVCG 432

Query: 403 QL---DPG-----------CEEQLLARLTWLSGNQGLALPHIGRETWNVLIQAGLIASFL 448
            L   +P            C  Q   RL          +  +G +T     + GLI S +
Sbjct: 433 SLAVREPDEAVRRCTGGLICAAQAKERLRHFVSRNAFDIEGLGEKTIEEFWEDGLIRSPV 492

Query: 449 DWLTL----DVAELANI--EGFGDSSRTRVLESLNSARQR-SFAQWLKALGV-------- 493
           D  TL    +  E+A +   G+ + S   +  ++N  R+R    +++ ALG+        
Sbjct: 493 DIFTLERRVEAGEIAILGRPGWKEKSVENLFAAINQRRERIDLHRFIFALGIRHIGEVTA 552

Query: 494 PPAARNN------LEGDWQTLVARDTQAWL---AIDGIGPGRAAQLSAFFRDPQ 538
              AR+       LEG  + +     +AW    A+ G+GP +A  L A+F DP+
Sbjct: 553 KSLARHYGSIDGWLEGMERAVANMPGEAWRDLHALSGLGPVKADALLAWFADPE 606



 Score = 31.2 bits (69), Expect = 2e-04
 Identities = 47/162 (29%), Positives = 67/162 (41%), Gaps = 41/162 (25%)

Query: 394 RDFHALSCWQLDPGCEEQLLARLTWLSGNQGLALPHIGRETWNVLIQAGLIASFLDWLTL 453
           RD HALS   L P   + LLA   W +  + L           +   AG  A  LD    
Sbjct: 582 RDLHALS--GLGPVKADALLA---WFADPENLP---------KLDFYAGPEALRLD---- 623

Query: 454 DVAELANIEGFGDSSRTRVLESLNSARQRSFAQW----LKALGVPPAARNNLEGDWQTLV 509
            V +L  I+   DS   + L    + R  + A+W    L A+G  P         W  LV
Sbjct: 624 SVIKLLGIKKV-DSRAAQAL----AERYGTLAEWKAAMLAAVGAQPGP------GWGELV 672

Query: 510 ARDTQAWLAIDGIGPGRAAQLSAFFRDPQVQALADTLRVAGI 551
           A        I  +G   A +L+ FF++ + +A+ D LR AG+
Sbjct: 673 A--------IPDVGEVAAEELAGFFQEERNRAIIDDLRAAGV 706