Pairwise Alignments

Query, 554 a.a., NAD-dependent DNA ligase LigB from Pseudomonas simiae WCS417

Subject, 678 a.a., DNA ligase (EC 6.5.1.2) from Acidovorax sp. GW101-3H11

 Score =  146 bits (368), Expect = 3e-39
 Identities = 151/582 (25%), Positives = 244/582 (41%), Gaps = 66/582 (11%)

Query: 33  LTEQIRLWDDSYHRLNQSPVSDELYDQAHQRLTHWRRCFPESPPKPDNPLASSRGTL--- 89
           L  Q+  W   Y+ L++  V D  YD+  + L       P+    PD+P     G +   
Sbjct: 5   LRAQLNHWAHQYYVLDEPTVPDAEYDRVFRELQALEAAHPDLVT-PDSPTQRVIGAVMEG 63

Query: 90  ----RHPIAHTGLEKLLDEQAVGAWL---STRQDVWI-----------QPKVDGVAVTLV 131
               RH +    +    D +A GA       R+++ +           +PK DG+A++L 
Sbjct: 64  LAPVRHTVPMLSIHTETDTEATGAQAFDARVRRELGLADADPAIEYVAEPKFDGLAMSLR 123

Query: 132 YRQGRLRQVISRGDGLMGHDWSASARRIPGIVQQLPEPIDLVLQ--GELYWHLDD----- 184
           Y  GRL Q  +RGDG +G D + + R I  I   LP  +  +L+  GE+Y    D     
Sbjct: 124 YENGRLVQAATRGDGEVGEDVTHNIRTIRQIPLTLPSGVPPLLEVRGEVYMRRADFDALN 183

Query: 185 HVQSANGG---LNARSKVAGLMNRLELSDAD-------AAGIGLFVWAWPEGPGSFT--E 232
             Q   GG   +N R+  AG + +L+ +          A G+G        GP   T  E
Sbjct: 184 ERQREQGGKTFVNPRNAAAGAVRQLDSNITAQRPLSFFAYGLGAITPPAEGGPVFRTHYE 243

Query: 233 RLAALARWGFTDSRRYSQPIRDIAE--ATHWRAYWYNHPLPFASDGVV--LHQAQRPPAR 288
            L  L  WGF  + +    + D  E  A H +       LP+  DGVV  ++  Q     
Sbjct: 244 MLQTLKSWGFPVATQVQIAV-DATELVAFHQQVGASRDALPYDIDGVVYKVNSLQLQRDL 302

Query: 289 RWKASEPYWAVAWKYPAAKALALVRNVRFKIGRTGRITPMLELEPVQLDDRQISRVSAGS 348
            +K  EP WAVA KYPA +    +  +  ++GRTG+ITP+  L PV +    ++  +  +
Sbjct: 303 GFKTREPRWAVAHKYPAQEMATKIEGIDVQVGRTGKITPVARLAPVFVGGVTVTNATLHN 362

Query: 349 LKRWQTLDIRPGDQVSISLAGQVIPRLDEVI--LRNAHRADLAAPDPRDFHALSCWQLDP 406
           L   +   +R GD V +  AG VIP +  V+   R  +  +   P        S    + 
Sbjct: 363 LFEIRKKGVRVGDTVIVRRAGDVIPEVVGVMPGNRTGYVPNFQMPTACPVCG-SAVVREK 421

Query: 407 G-----------CEEQLLARLTWLSGNQGLALPHIGRETWNVLIQAGLIASFLDWLTLDV 455
           G           C  Q    +   +  + + +  +G +  + L+ A +I +  D   L +
Sbjct: 422 GEANHRCTGGLFCAAQRKEAILHFAARRAMDIEGLGDKLVDQLVDANVIRTLPDLYRLGL 481

Query: 456 AELANIEGFGDSSRTRVLESLNSARQRSFAQWLKALG---VPPAARNNLEGDWQTLVA-- 510
             L  +E   + S   VL +L  ++Q +  ++L  LG   V  A   +L   + TL A  
Sbjct: 482 TSLIALERMAEKSAQNVLAALEKSKQTTLPRFLFGLGLRHVGEATAKDLAKHFGTLDAIM 541

Query: 511 -RDTQAWLAIDGIGPGRAAQLSAFFRDPQVQALADTLRVAGI 551
               +  L ++ +GP  A  L  FF  P  + + + LR  G+
Sbjct: 542 DASVEQLLEVNDVGPVVAQSLHTFFAQPHNREVVEQLRACGV 583