Pairwise Alignments

Query, 554 a.a., NAD-dependent DNA ligase LigB from Pseudomonas simiae WCS417

Subject, 669 a.a., DNA ligase (NAD(+)) LigA from Vibrio cholerae E7946 ATCC 55056

 Score =  129 bits (325), Expect = 3e-34
 Identities = 122/473 (25%), Positives = 213/473 (45%), Gaps = 45/473 (9%)

Query: 120 QPKVDGVAVTLVYRQGRLRQVISRGDGLMGHDWSASARRIPGI---VQQLPEPIDLVLQG 176
           +PK+DG+AV+L+Y  G L +  +RGDG  G + + + R I  I   +Q    P  L ++G
Sbjct: 113 EPKLDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRG 172

Query: 177 ELYWHLDD----HVQSANGG----LNARSKVAGLMNRLELSDADAAGIGLFVWAWPEGPG 228
           E++         + ++   G    +N R+  AG + +L+        +  + ++     G
Sbjct: 173 EVFMPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEG 232

Query: 229 -----SFTERLAALARWGFTDSRRYSQPIRDIAEATHWRAYWYN-----HPLPFASDGVV 278
                S  +R   L  WG       ++ +  +AE    +A++ +       L +  DGVV
Sbjct: 233 GELATSHYQRFLQLKGWGLPICPE-TKLVTSLAEV---KAFYQDILQRRQSLAYEIDGVV 288

Query: 279 LH--QAQRPPARRWKASEPYWAVAWKYPAAKALALVRNVRFKIGRTGRITPMLELEPVQL 336
           +     Q      + A  P WA+A+K+PA + L L+ +V F++GRTG ITP+ +LEPV +
Sbjct: 289 IKVDDIQLQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFV 348

Query: 337 DDRQISRVSAGSLKRWQTLDIRPGDQVSISLAGQVIPRLDEVIL----RNAH------RA 386
               +S  +  +    + L +  GD V I  AG VIP++  V+L     NA       R 
Sbjct: 349 GGVTVSNATLHNADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRC 408

Query: 387 DLAAPDPRDFHALSCWQLDPG--CEEQLLARLTWLSGNQGLALPHIGRETWNVLIQAGLI 444
            +   D       +  +   G  C+ Q    L      + + +  +G +    L+   ++
Sbjct: 409 PVCQSDVERVEGEAVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMV 468

Query: 445 ASFLDWLTLDVAELANIEGFGDSSRTRVLESLNSARQRSFAQWLKALG---VPPAARNNL 501
           ++  D   L   EL  +E  G  S   V+++LN A+Q +  ++L ALG   V  A   NL
Sbjct: 469 STPADLFRLRAGELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNL 528

Query: 502 EGDWQTLVA---RDTQAWLAIDGIGPGRAAQLSAFFRDPQVQALADTLRVAGI 551
              + +L A      + ++ +  +G   A+ L AFF   + Q + + L   GI
Sbjct: 529 AQHFLSLEAIQQASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELLEQGI 581