Pairwise Alignments

Query, 554 a.a., NAD-dependent DNA ligase LigB from Pseudomonas simiae WCS417

Subject, 787 a.a., NAD-dependent DNA ligase from Pseudomonas syringae pv. syringae B728a

 Score =  124 bits (311), Expect = 1e-32
 Identities = 118/483 (24%), Positives = 207/483 (42%), Gaps = 64/483 (13%)

Query: 120 QPKVDGVAVTLVYRQGRLRQVISRGDGLMGHDWSASARRIPGIVQQLPE---PIDLVLQG 176
           +PK+DG+AV+L+YR G L +  +RGDG  G D S + R +  I  +L     P  L ++G
Sbjct: 121 EPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPDVLEVRG 180

Query: 177 ELY-----WHLDDHVQSANGG---LNARSKVAGLMNRLELSDADAAGIGLFVWAWPEGPG 228
           E++     +   +  Q   GG    N R+  AG + +L+        +    +   +   
Sbjct: 181 EVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQTSA 240

Query: 229 SFTER----LAALARWGFTDSRRYSQP---------IRDIAEATHWRAYWYNHPLPFASD 275
              +     L AL +WG   SR               RDI E            L +  D
Sbjct: 241 EIADTHIGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGER--------RLTLTYEID 292

Query: 276 GVVLHQAQRPPARR--WKASEPYWAVAWKYPAAKALALVRNVRFKIGRTGRITPMLELEP 333
           GVV         R   ++A EP WA+A K+PA + L  + +V F++GRTG +TP+  L+P
Sbjct: 293 GVVFKVNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKP 352

Query: 334 VQLDDRQISRVSAGSLKRWQTLDIRPGDQVSISLAGQVIPRLDEVIL----RNAHRADLA 389
           V++    ++  +  ++     L +  GD V I  AG VIP++ +V+      NA    + 
Sbjct: 353 VKVAGVMVANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVAERRPENARAVQVP 412

Query: 390 APDPRDFHALSCWQLDP--------------------GCEEQLLARLTWLSGNQGLALPH 429
              P     +   QL                       C  QL   +      + + +  
Sbjct: 413 QTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEG 472

Query: 430 IGRETWNVLIQAGLIASFLDWLTLDVAELANIEGFGDSSRTRVLESLNSARQRSFAQWLK 489
           +G +T   L+   LI S  D   L   ++ ++EGF + S  ++L+++  +RQ + A+++ 
Sbjct: 473 LGDKTIEQLVDEKLIGSPADLYKLKYEQIIDLEGFAEISSNKLLKAIADSRQPTLARFIY 532

Query: 490 ALGVPPAARNNLEGDWQTLVARD------TQAWLAIDGIGPGRAAQLSAFFRDPQVQALA 543
           ALG+P       +   ++L + +       +    +  +G   A ++ +FF D   +++ 
Sbjct: 533 ALGIPDVGEETAKVLARSLASLERVKQALPEVLTYLPDVGLEVAYEIRSFFEDEHNRSVI 592

Query: 544 DTL 546
           D L
Sbjct: 593 DAL 595