Pairwise Alignments

Query, 554 a.a., NAD-dependent DNA ligase LigB from Pseudomonas simiae WCS417

Subject, 717 a.a., NAD-dependent DNA ligase LigA from Sinorhizobium meliloti 1021

 Score = 99.8 bits (247), Expect = 3e-25
 Identities = 134/603 (22%), Positives = 232/603 (38%), Gaps = 91/603 (15%)

Query: 26  ARAQVNTLTEQIRLWDDSYHRLNQSPVSDELYDQAHQRLTHWRRCFPE--SPPKPDNPLA 83
           A  ++  L  ++   D  YH  +   +SD  YD   +R       FP       P   + 
Sbjct: 16  AAEELAFLAAELARHDMLYHGKDAPEISDADYDALKRRNDLIEERFPVLVREDSPSRKVG 75

Query: 84  SSRGTLRHPIAHTGLEKLLDEQ-----------AVGAWLSTRQDVWI----QPKVDGVAV 128
           ++      P+ H      LD              V  +L    D  I    +PK+DG+++
Sbjct: 76  AAPSLTFAPVVHARPMLSLDNTFSDEDARAFVAGVYRFLGKLPDGSIAFTAEPKIDGLSM 135

Query: 129 TLVYRQGRLRQVISRGDGLMGHDWSASARRIPGIVQQLPE--PIDLVLQGELYWHLDDHV 186
           +L Y   RL    +RGDG  G + +A+ R I  I Q LP   P  + ++GE+Y    D  
Sbjct: 136 SLRYENRRLVTAATRGDGTTGENVTANVRTIGMIPQTLPADAPDVVEIRGEIYMAKSDFA 195

Query: 187 -----QSANGG---LNARSKVAGLMNRLELSDADAAGIGLFVWAWPEGPGSFTERLAALA 238
                 +A G    +N R+  +G + +L+        +  F +AW E      +    + 
Sbjct: 196 ALNAEMAAQGRPLYVNPRNTASGSLRQLDAKVTANRKLRFFAYAWGEMSAMPADTQLGMV 255

Query: 239 R----WGFTDSRRYSQPIRDIAEATHWRAYWYNHP-LPFASDGVVLHQAQRPPARR--WK 291
                WGF  +    +         H+       P L +  DGVV    +     R  ++
Sbjct: 256 ETFKAWGFPVNPLMQRFFSADELLEHYHHIERERPDLDYDIDGVVYKVDRLDLQARLGFR 315

Query: 292 ASEPYWAVAWKYPAAKALALVRNVRFKIGRTGRITPMLELEPVQL-----------DDRQ 340
           +  P WA A K+PA +A   ++ +  ++GRTG +TP+  LEP+ +           ++  
Sbjct: 316 SRSPRWATAHKFPAEQAFTRLKGIDIQVGRTGALTPVARLEPITVGGVVVTNATLHNEDY 375

Query: 341 ISRVSAGSLKRWQTLDIRPGDQVSISLAGQVIPRLDEVIL------RNAHRADLAAPDPR 394
           I  V           D+R GD V +  AG VIP++ +V++         +R     P   
Sbjct: 376 IRGVGNTGEPIRDGRDVRIGDMVIVQRAGDVIPQIVDVVMDERPEGAEPYRFPTTCPICG 435

Query: 395 DFHALSCWQLDPG-------------CEEQLLARLTWLSGNQGLALPHIGRETWNVLIQA 441
             HA+       G             C  Q +  L          +  +G +      ++
Sbjct: 436 S-HAVRDINEKTGKVDAVRRCTGGFVCRAQAVEHLKHFVSRNAFDIEGLGSKQIEFFFES 494

Query: 442 G----LIASFLDWLTLD------VAELANIEGFGDSSRTRVLESLNSARQRSFAQWLKAL 491
                 I +  +  TL+      + +L N +GFG  S  ++ E++N+ R  +  + + AL
Sbjct: 495 EDENLRIRTAPEIFTLERRQEASLNKLENTDGFGKVSVRKLYEAINARRSIALHRLIYAL 554

Query: 492 GVPPAARNNLE------GDWQTLVARDTQ-------AW---LAIDGIGPGRAAQLSAFFR 535
           G+        +      G ++   A  T+       AW    +IDGIG   A  +  F++
Sbjct: 555 GIRHVGETTAKLLARSYGSYEHFGAAMTEAAGFSGDAWNELNSIDGIGEVVARAIVEFYK 614

Query: 536 DPQ 538
           +P+
Sbjct: 615 EPR 617