Pairwise Alignments

Query, 554 a.a., NAD-dependent DNA ligase LigB from Pseudomonas simiae WCS417

Subject, 560 a.a., NAD-dependent DNA ligase LigB from Escherichia coli Nissle 1917

 Score =  432 bits (1111), Expect = e-125
 Identities = 229/563 (40%), Positives = 327/563 (58%), Gaps = 15/563 (2%)

Query: 2   MPLLLALLLSILPFRG--WAEECP--DTARAQ--VNTLTEQIRLWDDSYHRLNQSPVSDE 55
           M + +A+L+SIL ++   WA  CP    ARAQ  ++ L +QI+ WDD Y +  +S V D 
Sbjct: 1   MKVWMAILISILCWQSSAWAV-CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDG 59

Query: 56  LYDQAHQRLTHWRRCFPESPPKPDNPLASSRGTLRHPIAHTGLEKLLDEQAVGAWLSTRQ 115
           +YDQ   RLT W+RCF       D  +    G + HP+AHTG+ K+ D+ A+  W+  R 
Sbjct: 60  VYDQLSARLTQWQRCFGNETR--DVMMPPLNGAVMHPVAHTGVRKMADKNALSLWMRERS 117

Query: 116 DVWIQPKVDGVAVTLVYRQGRLRQVISRGDGLMGHDWSASARRIPGIVQQLPEPI-DLVL 174
           D+W+QPKVDGVAVTLVYR G+L + ISRG+GL G DW+   R I  + Q +  P+ +  L
Sbjct: 118 DLWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANSTL 177

Query: 175 QGELYWHLDDHVQSANGGLNARSKVAGLMNRLELSDADAAGIGLFVWAWPEGPGSFTERL 234
           QGE++     H+Q   GG+NAR+KVAGLM R   SD     + +FVWAWP+GP   T+RL
Sbjct: 178 QGEIFLKRKGHIQQQMGGINARAKVAGLMMRQGNSDT-LNSLAVFVWAWPDGPHLMTDRL 236

Query: 235 AALARWGFTDSRRYSQPIRDIAEATHWRAYWYNHPLPFASDGVVLHQAQRPPARRWKASE 294
             LA  GFT ++ Y++ +++  E  H R  W+   LPF +DGVV+  A+ P +R W   +
Sbjct: 237 KDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVRAAKEPESRHWLPGQ 296

Query: 295 PYWAVAWKYPAAKALALVRNVRFKIGRTGRITPMLELEPVQLDDRQISRVSAGSLKRWQT 354
             W VAWKY     +A V+ ++F +G++G+I+ +  L PV LDD++I RV+ GS++RWQ 
Sbjct: 297 AEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKIQRVNIGSVRRWQE 356

Query: 355 LDIRPGDQVSISLAGQVIPRLDEVILRNAHRADLAAPDPRDFHALSCWQLDPGCEEQLLA 414
            DI PGDQ+ +SLAGQ IPR+D+V+ R A R     P+ R F++L+C+     C+EQ ++
Sbjct: 357 WDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENR-FNSLTCYFASDVCQEQFIS 415

Query: 415 RLTWLSGNQGLALPHIGRETWNVLIQAGLIASFLDWLTLDVAELANIEGFGDSSRTRVLE 474
           RL WL   Q L L  IG   W  L Q         WL L   +L N  G   S   ++  
Sbjct: 416 RLVWLGSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWH 475

Query: 475 SLNSARQRSFAQWLKALGVP---PAARNNLEGDWQTLVARDTQAWLAIDGIGPGRAAQLS 531
             N ARQ+ F +W+ A+G+P    A   + E  W  L+    Q W  + G G GRA Q+ 
Sbjct: 476 QFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVI 535

Query: 532 AFFRDPQVQALADTLRVAGIDGF 554
            +  + Q++ L   L    I GF
Sbjct: 536 EWKENAQIKKLGSWLSAQQITGF 558