Pairwise Alignments

Query, 245 a.a., amino acid ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 286 a.a., extracellular solute-binding protein (RefSeq) from Shewanella loihica PV-4

 Score =  108 bits (269), Expect = 2e-28
 Identities = 72/227 (31%), Positives = 108/227 (47%), Gaps = 2/227 (0%)

Query: 19  PAFAQR-LRLVADAWPPFTDATLINGGLATDIVSTALARAGYASDFEQVPWARALMGVGD 77
           PA A+  L  V++ +PPF    +   G+   +V      AGY    E  P+ RA   +  
Sbjct: 46  PAMAKTPLISVSNDYPPFYSPQMSEWGVVYHLVEAVFEHAGYPLSHEFYPFIRAQTLIKR 105

Query: 78  GRYDVLVNAWYDDARTQLGQFSGEYLLNRVRFIKRRDDPIEFQNLEQLHDYPIAVVRGYA 137
              D+++  WY   R Q   FS   L   +R  KR D  I F++++ L  Y I + RGYA
Sbjct: 106 ELADLIIGVWYRPEREQWIDFSDPLLSVSIRLYKRSDSKIVFRDIKDLKPYLIGIGRGYA 165

Query: 138 YSAAFDGDAQLQKVPVHNFAMAVRMLAAQRVRLTVEDEYVARYYLSRESTRVRNTVEFLP 197
              AF G A L      + A+ +R L A RV L +  E VARY + R  +     +E + 
Sbjct: 166 NPVAF-GQANLNTEAASSDAVNLRKLLAGRVDLVLICEDVARYLIERPGSEYNGKLEPVG 224

Query: 198 KPLSENSLHILVSLKNPEHAQIVASFDREIAKMKADGSYARLMKQHG 244
            PLS    HI V+   P   QI+A F++ +A++   G   +++  HG
Sbjct: 225 DPLSVELFHIGVAKHLPNARQILADFNQSLAELHRSGELTKILASHG 271