Pairwise Alignments

Query, 245 a.a., amino acid ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 265 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 56.2 bits (134), Expect = 6e-13
 Identities = 58/228 (25%), Positives = 93/228 (40%), Gaps = 22/228 (9%)

Query: 25  LRLVADAWPPFT-DATLINGGLATDIVSTALARAGYASDFEQVPWARALMGVGDGRYDVL 83
           +RLV +AWPP + +   +  G   ++V+      G     E +PWARA          +L
Sbjct: 31  VRLVTEAWPPMSFEQDGVPTGFGVELVNMLQVSLGQQQSIEVLPWARAYSIASTTPNVLL 90

Query: 84  VNAWYDDARTQLGQFSGEYLLNRVRFIKRRDDPIEFQNLEQLHDYPIAVVRGYAYSAAFD 143
                 D R     F G    +++    + DD I   N+ QL D   A + G    +   
Sbjct: 91  FATSISDERETHFDFIGPIATSKITLYAKADDSI---NINQLSDVNAAGIVGVYRESV-- 145

Query: 144 GDAQLQKVPVHNFAMA------VRMLAAQRVRLTVEDEYVARYYLSRESTRVRNTVEFLP 197
           G   LQ+  V+   +A       + L   RVRL  + +   ++ L     +     E   
Sbjct: 146 GAQLLQQQGVNALLVASFPQQSAKQLLFSRVRLWCQADLAVKHILEEVGAK-----ESAI 200

Query: 198 KP---LSENSLHILVSLKNPEHAQIVASFDREIAKMKADGSYARLMKQ 242
           KP   L+E  L++  S   P  A+ V  +  E+ K K  G +ARL ++
Sbjct: 201 KPVYTLAEIRLYLAFSKGTP--AETVQRWQTELEKRKESGEFARLYQK 246