Pairwise Alignments

Query, 245 a.a., amino acid ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 296 a.a., extracellular solute-binding proteins, family 3 protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 47.0 bits (110), Expect = 4e-10
 Identities = 53/233 (22%), Positives = 97/233 (41%), Gaps = 15/233 (6%)

Query: 19  PAFAQRLRLVADAWPPFT--DATLINGGLATDIVSTALARAGYASDFEQVPWARALMGVG 76
           P     L +  + WPP+   D      GL  +++ T     G    F  VP  R+   + 
Sbjct: 33  PVCLNPLNVGYNDWPPYAWQDVQGEAQGLDVELLRTFAEFLGCEIKFINVPAKRSHQMLK 92

Query: 77  DGRYDVLVNAWYDDARTQLGQFSGEYLLNRVRF--IKRRDDPIEFQNLEQLHDYPIAVVR 134
            G  D+++ A     R +   FS  Y    VR   +  + D ++    + +    + ++ 
Sbjct: 93  SGALDMMMGATKIIEREEYAFFSEPYRDEEVRLFVLDEKKDKLKLDQWQDIFTQKLRLLV 152

Query: 135 GYAYSAAFDGDAQLQKVPVHNFAM-------AVRMLAAQRVRLTVEDEYVARYYLSREST 187
             +     D +   +++   N  +       +V+ML   R  L + D  +A  Y++ +  
Sbjct: 153 PVSGWYGVDYEESRERLAKENLLVLSPDADKSVQMLTYDRADLIIGDA-MAMPYIASQHQ 211

Query: 188 RVRNTVEFLPKPLSENSLHILVSLKNPEHAQIVASFDREIAKMKADGSYARLM 240
            VR  V  L   L  NS+H+++S K    AQ +A F+R I  +  +G  AR++
Sbjct: 212 GVRLLV--LNPILDHNSIHLMLS-KQSMSAQQLAQFNRAIKALTTNGEIARIV 261