Pairwise Alignments
Query, 245 a.a., amino acid ABC transporter substrate-binding protein from Pseudomonas simiae WCS417
Subject, 296 a.a., extracellular solute-binding proteins, family 3 protein (NCBI ptt file) from Shewanella oneidensis MR-1
Score = 47.0 bits (110), Expect = 4e-10 Identities = 53/233 (22%), Positives = 97/233 (41%), Gaps = 15/233 (6%) Query: 19 PAFAQRLRLVADAWPPFT--DATLINGGLATDIVSTALARAGYASDFEQVPWARALMGVG 76 P L + + WPP+ D GL +++ T G F VP R+ + Sbjct: 33 PVCLNPLNVGYNDWPPYAWQDVQGEAQGLDVELLRTFAEFLGCEIKFINVPAKRSHQMLK 92 Query: 77 DGRYDVLVNAWYDDARTQLGQFSGEYLLNRVRF--IKRRDDPIEFQNLEQLHDYPIAVVR 134 G D+++ A R + FS Y VR + + D ++ + + + ++ Sbjct: 93 SGALDMMMGATKIIEREEYAFFSEPYRDEEVRLFVLDEKKDKLKLDQWQDIFTQKLRLLV 152 Query: 135 GYAYSAAFDGDAQLQKVPVHNFAM-------AVRMLAAQRVRLTVEDEYVARYYLSREST 187 + D + +++ N + +V+ML R L + D +A Y++ + Sbjct: 153 PVSGWYGVDYEESRERLAKENLLVLSPDADKSVQMLTYDRADLIIGDA-MAMPYIASQHQ 211 Query: 188 RVRNTVEFLPKPLSENSLHILVSLKNPEHAQIVASFDREIAKMKADGSYARLM 240 VR V L L NS+H+++S K AQ +A F+R I + +G AR++ Sbjct: 212 GVRLLV--LNPILDHNSIHLMLS-KQSMSAQQLAQFNRAIKALTTNGEIARIV 261