Pairwise Alignments

Query, 461 a.a., RNA helicase from Pseudomonas simiae WCS417

Subject, 445 a.a., ATP-dependent RNA helicase PA3950 from Pseudomonas fluorescens FW300-N2E2

 Score =  250 bits (638), Expect = 8e-71
 Identities = 147/383 (38%), Positives = 223/383 (58%), Gaps = 11/383 (2%)

Query: 8   FNTLPLSAAMLANLDSLGYVEMTQIQAQSLPVILKGLDLIAQAKTGSGKTAAFGIGLLNP 67
           F TL L   +L  L++LGY   T +QAQ++P +L G DL+A A+TG+GKTA F + LL  
Sbjct: 3   FATLGLIEPLLRALETLGYQTPTPVQAQAMPAVLAGRDLMAAAQTGTGKTAGFAVPLLQL 62

Query: 68  IN---PRYFG--CQALVMCPTRELADQVAKEIRRLARAEDNIKVLTLC--GGVSLGPQIA 120
           +    P+      +AL++ PTRELA+QV + +R+ A+   N+ + T    GGVS+ PQ+ 
Sbjct: 63  LTTEGPKVAANSVRALILVPTRELAEQVHESVRQYAQ---NLPLSTYAVYGGVSINPQMM 119

Query: 121 SLEHGAHVIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIISKTPPR 180
            L  G  ++V TPGR+    R+ +L  + L TL+LDEADRMLD+GF + + +I    P +
Sbjct: 120 KLRKGVDLLVATPGRLLDLFRQNALKFNQLQTLVLDEADRMLDLGFSEELANIYKALPKK 179

Query: 181 RQTLLFSATYPVSIKQLASKFMRAPQQVKAEAFH-SDDQIEQRFYEISPEERMDAVTKVL 239
           RQTLLFSAT+  +I+ LA + +  P  ++    + + + ++Q    +  + + +    ++
Sbjct: 180 RQTLLFSATFSDAIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVTVDKKRKPELFVHLM 239

Query: 240 AHFRPASCVAFCFTKQQVQETVDHLTSKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLV 299
              +    + F  T+  V   V+ L   G++A G+HGD  Q  R + L  F      +LV
Sbjct: 240 RKHKWKQVLVFAKTRNGVDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKAGEVQILV 299

Query: 300 ATDVAARGLDIDSLDMVINVELARDSEIHIHRVGRTGRAGETGIAISLVAPSEAHRAQAI 359
           ATDVAARGLDI+ L +V+N +L   +E +IHR+GRTGRAG TG AISLV   E +   AI
Sbjct: 300 ATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGATGQAISLVCADEVNLLSAI 359

Query: 360 EQLQKSPLNWDQLDNLKPQSGGP 382
           E L +  L      + +P+   P
Sbjct: 360 EMLTRQTLPRQMEQDFEPEHRVP 382