Pairwise Alignments

Query, 461 a.a., RNA helicase from Pseudomonas simiae WCS417

Subject, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  273 bits (698), Expect = 1e-77
 Identities = 149/373 (39%), Positives = 230/373 (61%), Gaps = 1/373 (0%)

Query: 1   MTTIATAFNTLPLSAAMLANLDSLGYVEMTQIQAQSLPVILKGLDLIAQAKTGSGKTAAF 60
           M   A  F+ L L++A+L+ L  +G+V  T IQA ++PV+L+G D + +A+TG+GKTAAF
Sbjct: 21  MQDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAF 80

Query: 61  GIGLLNPINPRYFGCQALVMCPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSLGPQIA 120
            + LLN +N   +  QA+VM PTRELA QVA EI+ L +    +KVL + GG S+  Q+ 
Sbjct: 81  SLPLLNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMR 140

Query: 121 SLEHGAHVIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIISKTPPR 180
           +L+ GAH++VGTPGR++  + +  L LD  +T ILDEAD ML MGF D +  I+ + P  
Sbjct: 141 ALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPES 200

Query: 181 RQTLLFSATYPVSIKQLASKFMRAPQQVK-AEAFHSDDQIEQRFYEISPEERMDAVTKVL 239
            Q +LFSAT P  +K++  +F+R P+ V  A +  +  ++EQ+++ +   E+ +A+ ++L
Sbjct: 201 AQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLL 260

Query: 240 AHFRPASCVAFCFTKQQVQETVDHLTSKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLV 299
                 + + F  T+Q  +   D L ++G  A  LHGD+ Q  R++ +         +LV
Sbjct: 261 ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 320

Query: 300 ATDVAARGLDIDSLDMVINVELARDSEIHIHRVGRTGRAGETGIAISLVAPSEAHRAQAI 359
           ATDV ARGLD+  +  V N ++  D E +IHR+GRTGRAG  G AI LV  ++    + I
Sbjct: 321 ATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 380

Query: 360 EQLQKSPLNWDQL 372
           E++ +S +   QL
Sbjct: 381 ERVTRSSMEEIQL 393



 Score = 34.7 bits (78), Expect = 1e-05
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 389 TLCIAAGRKDKVRPGDILGALTGEAGIPGAQVGKIAIFDFQAFVAVERGIAKQALQRLND 448
           T  +  GR   V+  DI+GAL  E G+    +G I +     FV + + ++       ND
Sbjct: 504 TYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMS-------ND 556

Query: 449 GKIKGRSLRVR 459
              K R LR+R
Sbjct: 557 VSSKLRKLRIR 567