Pairwise Alignments

Query, 461 a.a., RNA helicase from Pseudomonas simiae WCS417

Subject, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

 Score =  481 bits (1237), Expect = e-140
 Identities = 248/459 (54%), Positives = 320/459 (69%), Gaps = 4/459 (0%)

Query: 5   ATAFNTLPLSAAMLANLDSLGYVEMTQIQAQSLPVILKGLDLIAQAKTGSGKTAAFGIGL 64
           A +F  L L   +LANL+++G+  MT IQAQSLP ILKG D+I Q KTGSGKTAAFG+G+
Sbjct: 3   ANSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGV 62

Query: 65  LNPINPRYFGCQALVMCPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSLGPQIASLEH 124
           L+ +N + F  QALV+CPTRELADQVA +IR L RA  NIKVLTLCGG+ +GPQI SLEH
Sbjct: 63  LSNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEH 122

Query: 125 GAHVIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIISKTPPRRQTL 184
           GAH++VGTPGRI  HL K  + L  LNTL+LDEADRML+MGF +A+E II+  P  RQTL
Sbjct: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTL 182

Query: 185 LFSATYPVSIKQLASKFMRAPQQVKAEAFHSDDQIEQRFYEI-SPEERMDAVTKVLAHFR 243
           LFSATYP SI+Q+A    R    +K EA H    I Q FY++     R +A+  +L H +
Sbjct: 183 LFSATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQ 242

Query: 244 PASCVAFCFTKQQVQETVDHLTSKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDV 303
           P S V FC TK++VQ   D L   G S + LHGD+EQR+RDQ L  FAN+S S+LVATDV
Sbjct: 243 PTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDV 302

Query: 304 AARGLDIDSLDMVINVELARDSEIHIHRVGRTGRAGETGIAISLVAPSEAHRAQAIEQLQ 363
           AARGLD+D+LD V N +L+RD E+H+HR+GRTGRAG  G+A S  + +E++R   I++  
Sbjct: 303 AARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYM 362

Query: 364 KSPLNWDQLDNLKPQSGG-PLLPQMSTLCIAAGRKDKVRPGDILGALTGEAGIPGAQVGK 422
              +    L   +P +G  P    M T+ I  G+KDKVRPGDILGALT +  +    +GK
Sbjct: 363 DIAIEPSTLP--QPAAGARPYAANMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGK 420

Query: 423 IAIFDFQAFVAVERGIAKQALQRLNDGKIKGRSLRVRIL 461
           I +F  +A+VAV + IA +AL ++ +GK+KGR  R R+L
Sbjct: 421 INLFPMRAYVAVHKKIATKALNKIANGKMKGRQFRARLL 459