Pairwise Alignments

Query, 461 a.a., RNA helicase from Pseudomonas simiae WCS417

Subject, 599 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  288 bits (738), Expect = 3e-82
 Identities = 152/369 (41%), Positives = 227/369 (61%), Gaps = 1/369 (0%)

Query: 1   MTTIATAFNTLPLSAAMLANLDSLGYVEMTQIQAQSLPVILKGLDLIAQAKTGSGKTAAF 60
           M++    F  L LS  +L  LD LGY + T IQA S+  ++ G D++ QA+TG+GKT AF
Sbjct: 1   MSSSEKTFRELGLSEPLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAF 60

Query: 61  GIGLLNPINPRYFGCQALVMCPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSLGPQIA 120
            + LLN I+P     Q LV+ PTRELA QVA+     ++    + VL + GG S+  Q+ 
Sbjct: 61  ALPLLNAIDPNRNVPQILVLAPTRELAVQVAEAFGSYSKFMKGLHVLPIYGGQSMHQQLN 120

Query: 121 SLEHGAHVIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIISKTPPR 180
           +L  G  ++VGTPGR+  H+R+G+L L+ LN L+LDEAD ML MGF D IE I+  TP  
Sbjct: 121 ALRRGPQIVVGTPGRVMDHMRRGTLKLETLNALVLDEADEMLKMGFIDDIEWILEHTPQE 180

Query: 181 RQTLLFSATYPVSIKQLASKFMRAPQQVKAEAFHSD-DQIEQRFYEISPEERMDAVTKVL 239
           RQ  LFSAT P  IK++A+K+++ P  +   A H+  + IEQRF ++S   +++A+ +VL
Sbjct: 181 RQLALFSATMPEQIKRVANKYLQTPVHISIAASHTTVESIEQRFVQVSQHNKLEALVRVL 240

Query: 240 AHFRPASCVAFCFTKQQVQETVDHLTSKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLV 299
                   + F  T+    E  + L ++G ++  LHGD+ Q+ R++ +         +L+
Sbjct: 241 EVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILI 300

Query: 300 ATDVAARGLDIDSLDMVINVELARDSEIHIHRVGRTGRAGETGIAISLVAPSEAHRAQAI 359
           ATDVAARGLD++ +  VIN ++  D+E ++HR+GRTGRAG TG+AI  V   E    + I
Sbjct: 301 ATDVAARGLDVERIGHVINYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTI 360

Query: 360 EQLQKSPLN 368
           E+  KS ++
Sbjct: 361 ERATKSRIS 369



 Score = 47.8 bits (112), Expect = 1e-09
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 365 SPLNWDQLDNLKPQSGGPLLPQMSTLCIAAGRKDKVRPGDILGALTGEAGIPGAQVGKIA 424
           +P N  Q D LK         +M    +  GR   V  G+I+GA+  EA I    +G+I 
Sbjct: 473 TPANLGQADTLKDHPD----VKMCRYVLDVGRDHGVGVGNIVGAVANEANIDSRYIGQIQ 528

Query: 425 IFDFQAFVAVERGIAKQALQRLNDGKIKGRSLRVR 459
           +FD    + +  G+ K  LQ L   ++ G+ L +R
Sbjct: 529 LFDQITSIDLPEGMPKDVLQHLKKVRVCGKPLNIR 563