Pairwise Alignments

Query, 461 a.a., RNA helicase from Pseudomonas simiae WCS417

Subject, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

 Score =  278 bits (711), Expect = 3e-79
 Identities = 146/372 (39%), Positives = 234/372 (62%), Gaps = 3/372 (0%)

Query: 7   AFNTLPLSAAMLANLDSLGYVEMTQIQAQSLPVILKGL-DLIAQAKTGSGKTAAFGIGLL 65
           +F  L LS  +L  L+  G+   T IQ Q++P++++G  D++ QA+TG+GKTAAFGI +L
Sbjct: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62

Query: 66  NPINPRYFGCQALVMCPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSLGPQIASLEHG 125
             I+      QAL++ PTRELA QVA+EI  + +    + V  + GG S+  QI  L  G
Sbjct: 63  ETIDEHSRNTQALILAPTRELAIQVAEEIDSI-KGSKRLNVFPVYGGQSIDRQIRELRRG 121

Query: 126 AHVIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIISKTPPRRQTLL 185
             ++VGTPGRI  H+ + ++ L+ ++ ++LDEAD ML+MGF D +E+I+      ++ LL
Sbjct: 122 VQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRMLL 181

Query: 186 FSATYPVSIKQLASKFMRAPQQVKAEAFHSDDQI-EQRFYEISPEERMDAVTKVLAHFRP 244
           FSAT P SI +LA  +MR    +K +       + +Q FYEI   ++ + +++++   + 
Sbjct: 182 FSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDTEKE 241

Query: 245 ASCVAFCFTKQQVQETVDHLTSKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVA 304
              + FC TK  V E  + L  KG +A GLHGD+ Q  R++ L  F  +  +VLVATDVA
Sbjct: 242 FYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATDVA 301

Query: 305 ARGLDIDSLDMVINVELARDSEIHIHRVGRTGRAGETGIAISLVAPSEAHRAQAIEQLQK 364
           ARG+DI+ L  V+N ++ ++ E ++HR+GRTGRAG+ G AI+ V PSE  + + I+++ K
Sbjct: 302 ARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQKIAK 361

Query: 365 SPLNWDQLDNLK 376
           + +  +++ ++K
Sbjct: 362 TEIKREEVPDVK 373



 Score = 30.4 bits (67), Expect = 2e-04
 Identities = 15/67 (22%), Positives = 34/67 (50%)

Query: 390 LCIAAGRKDKVRPGDILGALTGEAGIPGAQVGKIAIFDFQAFVAVERGIAKQALQRLNDG 449
           L +A G+ DK+ P  ++  ++ ++ + G  +  + +F+  +FV V    A+  L    + 
Sbjct: 465 LFVALGKLDKMNPKKLVDHISRKSDVKGRDIDDVKVFEKFSFVTVSSSDAEIILDSFKNE 524

Query: 450 KIKGRSL 456
           +   RS+
Sbjct: 525 RRGRRSI 531