Pairwise Alignments

Query, 281 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 277 a.a., ABC transporter permease subunit from Methanococcus maripaludis S2

 Score =  204 bits (519), Expect = 2e-57
 Identities = 102/265 (38%), Positives = 173/265 (65%), Gaps = 5/265 (1%)

Query: 9   LGQYIAAFVEWLTQHGANYFDAIASTLETMIHGVTFALTWFNPLALIGLIALLAHFIQRK 68
           +G+++   +++L  + + +FD I+  +++ +    F L   NP  +I LIA++   + + 
Sbjct: 9   IGKFLVNLIDFLIDNYSGFFDLISYVIQSGVDFFHFLLFSINPYLMILLIAVI---VWKT 65

Query: 69  WGLTVFVIASFLLIL--NLGYWQETMETLAQVLFATLVCVVIGVPLGIVAAHKPMFYTMM 126
             L   + + F L++   +G W  +M TL+ ++ +TL+ +++G+PLGIV A   +  T++
Sbjct: 66  VNLKSMLYSVFFLVIIVMMGLWDTSMITLSLIITSTLIALLLGIPLGIVKARSKLVSTLL 125

Query: 127 RPVLDLMQTVPTFVYLIPTLTLFGLGVVPGLISTVVFAIAAPIRLTYLGIRDVPQELMDA 186
            P+LD+MQT+P+  YLIP +  FG+G VPG+I+TV+FA+   I+LT LGI  V  EL++ 
Sbjct: 126 DPMLDVMQTLPSLAYLIPAVLFFGIGEVPGVIATVIFAMPPAIKLTALGIEQVSNELIEV 185

Query: 187 GKAFGCSRRQLLSRIELPHAMPSIAAGITQCIMLSLSMVVIAALVGADGLGKPVVNALNT 246
           G+AFG +  Q+L++IELP A+PSI  G+ Q IMLS SMVVIA  +G+ GLG+ +++ +  
Sbjct: 186 GRAFGGTSWQILTKIELPTAVPSIMMGVNQAIMLSFSMVVIAGFIGSGGLGEVIISGIQR 245

Query: 247 ADIALGFEAGLAIVLLAIMLDRICK 271
             +A   EAG+A+  LA++ DRI +
Sbjct: 246 YSLAPALEAGIAVTFLAVIFDRITR 270