Pairwise Alignments

Query, 315 a.a., glycine/betaine ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 303 a.a., ABC transporter, periplasmic substrate-binding protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 55.5 bits (132), Expect = 2e-12
 Identities = 68/274 (24%), Positives = 115/274 (41%), Gaps = 25/274 (9%)

Query: 35  VGWTDIT---VTTATTSEILKGLGYKPRTTMISVPVTYKSLADGKNMDVFLGNWMPTMEN 91
           +G TD++   VT A  ++++  +G +   +       +  L  G+ +D+    W+P    
Sbjct: 27  LGVTDLSFHRVTAAVVAQVMHLMGKRVELSYALHEANFNRLKLGQ-IDLLCSAWLPHSHG 85

Query: 92  DIKQYRDAGTVETVRANLENAKYTL-AVPEALYNKGLKDFADIAK--FKDELGGKIYGIE 148
             +Q  +   V T    L    Y L  VP+ +    +    D+ K   K  +   I GI 
Sbjct: 86  VYRQEVET-QVTTRELGLHYEPYALWGVPDYVPEDAVSRIEDLLKPEVKQRMRPIIQGIG 144

Query: 149 PGNDGNRTIQTLIDKDAFGLKTAGFKVVESSEAGMLSQVERATK-RDQAIVFLGWEPHPM 207
            G    R  + ++++  +GL  AG++    ++A  ++  E A   RD  IV L W P  +
Sbjct: 145 EGAGITRFSKNIMEQ--YGLTAAGYQFRTGTQADCVAAFESAVSVRDWVIVPL-WHPQFL 201

Query: 208 NTRFKM------KYLTGGDDSFGPNYGQATIYTNTRKGYTEECSNVGQLLKNLVFTLNME 261
           + ++ +      K L GG D       +A +    R+          Q+L N+V +  + 
Sbjct: 202 HHQYGIRDLQDPKGLLGGKD-------KAVLLARERELAINFSPEQIQVLDNIVLSNQIV 254

Query: 262 STLMGNVLDDKMKPDAAAKAWLKKNPQVLDTWLA 295
           + L   V    M  D AA  WL  NP  L TWLA
Sbjct: 255 AELDYAVNRQGMTEDEAAANWLAVNPSHLTTWLA 288