Pairwise Alignments

Query, 236 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 239 a.a., Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (NCBI) from Rhodospirillum rubrum S1H

 Score =  168 bits (425), Expect = 1e-46
 Identities = 85/227 (37%), Positives = 148/227 (65%), Gaps = 2/227 (0%)

Query: 11  LNLELFERYAPRFI-DGLLVTAKLVAISFSLGALLGLLLALGRLSSNRWLRGITGTYMYF 69
           +NL+L   + P+ + +GL VT KLV ++ ++G  + +  AL R+  +  +R     +++F
Sbjct: 1   MNLDLVATFLPKLLFEGLPVTLKLVTLAVAIGVFIAIPTALLRVHPSPLVRAFPYAFIFF 60

Query: 70  FRGSPLLAQLFMLYYGLGSFKSFWQDVGLWWFFRDAWLCTLLAFTLNTAAYQAEIMRGAL 129
           FRG+PLL Q+ ++YYGL +     ++  LW   R+ + C L+AF LNT AY AEI+RGA+
Sbjct: 61  FRGTPLLIQIALVYYGLSTLPWIRENEVLWPILREPFWCALIAFALNTGAYSAEILRGAI 120

Query: 130 TAVAPGQREAAQMLGLSRWATLQKVILPQSLLVAVGPLGNELILMIKASSIASLVTLYDL 189
            A+  G+ EAA+  G+     ++++ILP++  + +   GNE+IL++K S++AS +TL D+
Sbjct: 121 QAIPRGEVEAARAYGMRGLLIVRRIILPRAFQIGLPAYGNEIILILKGSALASSITLLDI 180

Query: 190 MGVAKLAFSRSF-DFQIYLWAAVLYLAIVEVVRRTLRRLERSLSKHI 235
            GVA+L ++R +   + ++ A V+YL +V ++ R LR +ER LS+H+
Sbjct: 181 TGVARLLYARYYTPVEAFVTAGVIYLILVYLLTRGLRLIERRLSRHL 227