Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 168 a.a., RNA polymerase sigma factor from Herbaspirillum seropedicae SmR1

 Score =  143 bits (361), Expect = 1e-39
 Identities = 71/156 (45%), Positives = 106/156 (67%), Gaps = 1/156 (0%)

Query: 12  VGALYRDHRGWLLAWLRRNVACPSRAEDLSQDTFMRLLGRDELRAP-REPRAFLMAIAKG 70
           + ALY DH  WL  WL+R +    +A DL+QDTF+RLLG + + +   EPRA+L  +A+ 
Sbjct: 7   IEALYCDHHSWLKGWLQRRLGNSEQAADLAQDTFLRLLGSERVPSVIHEPRAYLTTVAQR 66

Query: 71  LLFDYFRRAALEQAYLTELMLIPESEHPSPEEQHLILEDLKAIDRLLGKLSSKARAAFLY 130
           L+ + +RR  LEQAYL  L   P +  PSP+EQ ++LE L  +D+LL +L S  R AFL 
Sbjct: 67  LVSNLWRREKLEQAYLEALAQAPVALAPSPQEQAILLETLLELDQLLDELPSIVRRAFLL 126

Query: 131 NRLDGIGHAEIAQRLGVSVPRVRQYLAQGIRQCYIA 166
           ++LDG+ HA++A  LG+S+P V++YL + +++CY A
Sbjct: 127 SQLDGLTHAQVAAALGISIPTVKRYLVKALQRCYFA 162