Pairwise Alignments

Query, 767 a.a., hypothetical protein from Pseudomonas simiae WCS417

Subject, 789 a.a., YgiQ family radical SAM protein from Vibrio cholerae E7946 ATCC 55056

 Score =  988 bits (2554), Expect = 0.0
 Identities = 503/786 (63%), Positives = 581/786 (73%), Gaps = 55/786 (6%)

Query: 6   PLFDYPKYWAECFGPAPFLPMSREEMDQLGWDSCDIIIVTGDAYVDHPSFGMAIIGRLLE 65
           P+  Y KYWAECFG APFLP SREEMDQLGWDSCD+IIVTGDAYVDHPSFGMAIIGRLLE
Sbjct: 7   PIHHYKKYWAECFGTAPFLPTSREEMDQLGWDSCDVIIVTGDAYVDHPSFGMAIIGRLLE 66

Query: 66  SQGFRVGIIAQPNWQSKDDFMKLGEPNLFFGVAAGNMDSMINRYTADKKIRSDEAYTPGG 125
           +QGFRVGIIAQP WQ+KD FM LG+PNLFFGV AGNMDSMINRYTADKKIR D+AYTP  
Sbjct: 67  AQGFRVGIIAQPEWQTKDAFMTLGKPNLFFGVTAGNMDSMINRYTADKKIRHDDAYTPNN 126

Query: 126 MAGKRPDRASLVYSQRCKEAYKNVPIVLGGIEASLRRIAHYDYWQDRVRNSILIDATADI 185
             G RPDR SLVYSQRC+EAYK+VPIVLGGIEASLRR+AHYDYW D+VR SIL+DA ADI
Sbjct: 127 KGGMRPDRCSLVYSQRCREAYKDVPIVLGGIEASLRRVAHYDYWSDKVRRSILLDAKADI 186

Query: 186 LLYGNAERAIVEVAQRLSWGHKIEDITDVRGTAFIRRDTPVGWYEVDSTRIDRPGKIDKI 245
           LL+GNAERA+VEVA RL+ G  I  + D+RGTA      P  +  +DSTRID+P K    
Sbjct: 187 LLFGNAERALVEVAHRLANGESINKMVDIRGTAVNLAQVPEHFKIIDSTRIDQPNKPFVP 246

Query: 246 INPY-VNTQDTQACAIEQEKGPQDDPEEAKVVQILASPRMTRDKTVIRLPSVEKVRNDAV 304
            NPY V TQ    CA    KG  D+ EEA+ + I  S R     T +RLPS EK+ ND +
Sbjct: 247 SNPYEVETQ----CAT---KG--DEKEEAQPITIRPS-RHDAKTTAVRLPSFEKLVNDRI 296

Query: 305 LYAHANRVLHLETNPGNARALVQKHGEVDVWFNPPPIPMTTEEMDYVFGMPYARVPHPAY 364
           LYAHA+RVLHLETNP + RALVQ+HG+ ++W N  PIP+TTEEMD+VFG+ YARVPHP Y
Sbjct: 297 LYAHASRVLHLETNPYSGRALVQRHGDRELWVNQAPIPLTTEEMDFVFGLYYARVPHPKY 356

Query: 365 GKEKIPAYDMIRFSVNIMRGCFGGCTFCSITEHEGRIIQNRSEESIIREIEEIRDKVPGF 424
           G  KIPAYDMI+ SVNIMRGCFGGC+FCSITEHEGRIIQNRS+ESII E++EIRDKVPGF
Sbjct: 357 GDAKIPAYDMIKTSVNIMRGCFGGCSFCSITEHEGRIIQNRSQESIINELKEIRDKVPGF 416

Query: 425 TGVISDLGGPTANMYRIACKSPEIESACRKPSCVFPGICPNLNTDHSSLIQLYRSARALP 484
           TGVISDLGGPTANMYR+ C  P+ E+ CR+PSCVFPGIC  LNTDH   I LYR+AR + 
Sbjct: 417 TGVISDLGGPTANMYRLGCSDPKAEANCRRPSCVFPGICHKLNTDHKHTIDLYRAARDVD 476

Query: 485 GVKKILIASGLRYDLAVESPEYVKELVTHHVGGYLKIAPEHTEEGPLNQMMKPGIGSYDK 544
           G+KK++IASG+RYDLA+ESPEYV+ELVTHHVGGYLKIAPEHTE+GPL+ MMKPG+G+YD+
Sbjct: 477 GIKKVVIASGVRYDLAIESPEYVRELVTHHVGGYLKIAPEHTEKGPLSMMMKPGMGTYDR 536

Query: 545 FKRMFEKYTKEAGKEQYLIPYFIAAHPGTTDEDMMNLALWLKGNGFRADQVQAFYPSPMA 604
           FK +FEKY+ EAGK+QYLIPYFIAAHPGT DEDM+NLALWLK N +R DQVQ FYPSPM 
Sbjct: 537 FKELFEKYSAEAGKKQYLIPYFIAAHPGTEDEDMVNLALWLKSNNYRCDQVQNFYPSPMC 596

Query: 605 TATAMYHSGKNPLRKVTYKS-DAVTIVKSEEQRRLHKAFLRYHDPKGWPMLREALTRMGR 663
            ATAMYH+  NPL++V YK  + V + K E QRRLHKA LRYHDP  WPM+REAL  MG+
Sbjct: 597 NATAMYHAEVNPLKRVKYKKPEKVPVAKGEAQRRLHKALLRYHDPANWPMIREALIAMGK 656

Query: 664 ADLIGPGKDQLIPLHQPATDSYQSARRKNS---TPAGSHKVAKETTTKILTQHTGLPP-- 718
             LIG   + LIP              K+S   TPA S K  +    +  T+HT   P  
Sbjct: 657 RHLIGDRPECLIP-------------EKDSDLVTPAQSRKSGRHGANRFATKHTHSQPGF 703

Query: 719 --------RGSDGSNPWDKREQAKAAA-----------------QARNKQAAKERADAAK 753
                    G    N  +K  Q K A                   AR++Q   ++     
Sbjct: 704 DALRGNKSGGQGRPNSGNKSNQGKPAGSKPTGSKPTANKPAGNQSARSEQNRGQQGQRGS 763

Query: 754 GKGGKP 759
             GGKP
Sbjct: 764 ATGGKP 769