Pairwise Alignments

Query, 632 a.a., transcriptional initiation protein Tat from Pseudomonas simiae WCS417

Subject, 685 a.a., hypothetical protein (RefSeq) from Shewanella sp. ANA-3

 Score =  360 bits (925), Expect = e-104
 Identities = 244/685 (35%), Positives = 337/685 (49%), Gaps = 106/685 (15%)

Query: 18  LTRRRFIGAGALCGAAMFLGGNLLTRSALAVNAASASPL--------------LGFTSIA 63
           L+RR F+ +G   GA     G  L     + N+ + +P+              L FTS+A
Sbjct: 27  LSRRNFVKSGLGLGAMTAFAGMGLVGCG-SDNSPAPTPIDPVPPLPPTQSSAKLSFTSVA 85

Query: 64  AATSDAITLPPGYSASVLISWGQPLSKSAPAFDPSGNGTAKAQEQQFGDNNDGMSLFAFP 123
            +  DA+ +P GYSA VL  WG PL+  A  +   G+ TA  Q    G ++DGM  F   
Sbjct: 86  GSRLDAVVVPEGYSAQVLAPWGTPLNAKAAPWKADGSNTADDQANSVGMHHDGMHFFPLN 145

Query: 124 GDDNRALMAINNEYTNYRYLFAHG-------GAPQSAEDVHKAQASEGVSVIEVRRKGDT 176
              +  L+ IN+EY +   L  +G       G     +++ K   + GVSV+ ++   + 
Sbjct: 146 DAGDDGLLCINHEYIDEIALHPNGPTVDETTGLRTIIDEIRKEINAHGVSVVRIKLVNNQ 205

Query: 177 WQFVQDSRYNRRIHGNSPIRLSGPAAGHDWLKTSADKSGKKALGTFQNCANGKTPWGTYL 236
           W+ V +  +NRR  G + + ++GP A    L+T     G +A GT  NC NG TPWGTYL
Sbjct: 206 WEVVYNDSHNRRFTGATVMDIAGPLAYSPLLETRYSPDGSQARGTLNNCGNGYTPWGTYL 265

Query: 237 TCEENFTDCFGSSNPQQTFDAGQKRYGVVAASKDINW-----HQHD-----PRFDIAKN- 285
           TCEEN+   F +   + T  A Q R G+  +S    W     H  +      RFD+    
Sbjct: 266 TCEENWPGYFAN---RGTLAADQARIGISKSSTRYGWDDLAGHAEERLDEFARFDVTPKG 322

Query: 286 -------PNELNRHGWVVEIDPFDPQSTPAKRTALGRFKHENAALAETRDGRAVV-YMGD 337
                   NE N HG++VEIDP++P S   KRTALGRF+HE     +  +G+ VV Y G 
Sbjct: 323 NSAQDDYRNEANGHGYIVEIDPYNPSSRAIKRTALGRFRHEGCTFGKLTEGKPVVFYSGH 382

Query: 338 DERGEFIYKFVS------RDKINHKNPKANKDLLDHGTLYVAIFDAGDGNTDHPKGKGQW 391
           D + E++YKFVS      +D  +    +     ++ GTLY A F        +  G G W
Sbjct: 383 DSQFEYLYKFVSNALWDPQDANSTNRLQMGDKYMNEGTLYAAKF--------NENGAGIW 434

Query: 392 VELTHGKNGIDAST---GFASQAEVLIHARLAASVVKATRMDRPEWIVVSPTDGQVYCTL 448
           + L       D  T    FAS AE++++   AA +V AT MDRPEW  V P  G  Y TL
Sbjct: 435 LPLILDSQTTDGKTLGDSFASLAEIILNTAGAADLVGATPMDRPEWCAVDPFTGSAYLTL 494

Query: 449 TNNAKRGEEGQPVGGPNPREKNVYGQILRW-KADADNHGASTFTWDLFVVAGNPGVHAGT 507
           TNN+KR E        NPR KN +G I+RW + D D    + FTWD+FV  G+P    G 
Sbjct: 495 TNNSKRTE----ANPANPRLKNSFGHIIRWDEGDKD----TEFTWDIFVF-GSPS--DGN 543

Query: 508 PKGGSSNINPQNMFNSPDGLGFDKAGRLWILTDGDYSNAGDFAGMGNNQMLCADPAT--- 564
            +   S +   N F SPDGL FD  G LW+ TD   + A + A   N+QML   P+T   
Sbjct: 544 AETNLSGLTDLNQFASPDGLAFDARGILWVQTD---NGAKEVAEETNDQMLAIVPSTLVD 600

Query: 565 -------------GEIRRFMVGPVACEVTGISFSPDQKTLFVGIQHPGETGGSTWP---- 607
                         E++RF VGP  CEVTG + SPD  ++F  IQHPG      WP    
Sbjct: 601 SANKQASVTAENQMELKRFFVGPNDCEVTGFAISPDYTSVFANIQHPG-----NWPYSNN 655

Query: 608 --EHLPNG---KPRSSVMAIRRDDG 627
             E  P G   +PR++ + IR+ DG
Sbjct: 656 AAEITPAGTVLRPRAATVVIRKLDG 680