Pairwise Alignments

Query, 780 a.a., pyrroloquinoline quinone biosynthesis protein PqqF from Pseudomonas simiae WCS417

Subject, 929 a.a., peptidase, M16 family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  133 bits (334), Expect = 5e-35
 Identities = 82/207 (39%), Positives = 107/207 (51%), Gaps = 1/207 (0%)

Query: 12  LTLANGLQVALQHAPRLKRCAAVLRVAAGSHDVPLAWPGLAHFLEHLLFLGTERFPTSEG 71
           L L N L+V L       + AA + VA G  D P   PG+AHFLEH+LFLGTE+FP S  
Sbjct: 20  LQLDNALRVLLVEDLDASQAAASMAVAVGHFDDPADRPGMAHFLEHMLFLGTEKFPDSGE 79

Query: 72  LMAYVQRHGGQVNASTRERTTDFFFELPVATFAGGLERLGDMLTHPRLALEDQLREREVV 131
             A++ +HGG  NA T    T+FFF +    FA  L+R       P+  LE   RER+ +
Sbjct: 80  YHAFINQHGGSNNAWTGTEHTNFFFTINADVFADSLDRFSQFFIAPKFDLELVDRERQAI 139

Query: 132 HAEFVAWSQDAKAQQQVALLEGLAADHPLRGFHAGNRDSLPVEREAFQQALREFHAQFYQ 191
            +EF    +D   +    L E +   HP   F  GN  +L  E+   +  L  F+   Y 
Sbjct: 140 ESEFSLKLKDDIRRTYQVLKETVNQQHPFSKFSVGNLVTLGGEQAQVRSELLTFYQTHYS 199

Query: 192 SGQMTLSLAGPQSLEALQGLA-QSFSE 217
           +  MTL L  P SL+ALQ LA Q FSE
Sbjct: 200 ANLMTLCLVAPMSLDALQALAMQYFSE 226



 Score = 52.8 bits (125), Expect = 9e-11
 Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 1/98 (1%)

Query: 589 SLSGQ-RLWHTLKTDSDEAALLLFCQAPSQSLADEAAWRLLGHLVQGPFYQRLRVELQIG 647
           +L+GQ  L   L  D  ++A++++ Q+ + +    A + LL H +   F+  LR E Q+G
Sbjct: 711 NLTGQGTLLRELAIDHQDSAIIVYYQSATATPEKMALFSLLNHTMSSTFFHELRTEKQLG 770

Query: 648 YAVFSGIRQISGQTGLLFGVQSPSVSLEGIADHLQAFL 685
           Y V +G   ++   GL+F +QSP+     + + +  F+
Sbjct: 771 YMVGTGYLPLNRHPGLIFYIQSPTTGPLSLLEAIDEFI 808