Pairwise Alignments

Query, 1247 a.a., diguanylate cyclase from Pseudomonas simiae WCS417

Subject, 879 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  498 bits (1281), Expect = e-144
 Identities = 260/579 (44%), Positives = 378/579 (65%), Gaps = 3/579 (0%)

Query: 657  PIGDDDCMLTIARDITERQLMQEKLQQAATVFESTAEGVLITDTRQNISAVNRAFSEITG 716
            P G+   ++ + R+I++ + ++E+L  A  VF+ + EGV++TD   NI+ VN AF EITG
Sbjct: 302  PDGELAGVIGMTRNISKHKEVEEQLTLATNVFKHSFEGVVVTDRHGNITDVNGAFYEITG 361

Query: 717  YSEAEALGNTPRLLASGLHDSAFYAAMWHQLTAQGHWQGEISNRRKNGELYPSWLTISAV 776
            YS  E LG  PRL  SG H+ AF+  MW+ L   G W GEI NRRK+G ++P  +TISA+
Sbjct: 362  YSREELLGQNPRLFNSGRHEKAFFETMWNNLLGGGKWNGEIWNRRKDGTIFPQNITISAI 421

Query: 777  RNREQLITHFVAVFADISSLKLAQARLDYQAHHDPLTGLPNRTLFESRLQAALNGHQETG 836
             +    I +FVAVFADIS+ K ++A+L + A+ DPLT LPNR     +L+  +   +   
Sbjct: 422  YDEVGEIRYFVAVFADISAQKQSEAQLAHLAYFDPLTHLPNRMKLMIQLKQEIMHAKRLN 481

Query: 837  QQGAVLFLDLDRFKHINDSLGHPIGDLLLKDIAVRLKEQLRDIDTVARLGGDEFIILLPG 896
             Q A +F+D+D FKHINDS GH IGD +L ++A RL+ QL++ D ++R+G DEF+ L+ G
Sbjct: 482  SQLATVFIDVDLFKHINDSFGHSIGDEMLVELAKRLRSQLQEQDVLSRIGSDEFVALISG 541

Query: 897  LQHASDAQYLANKLLACFTPPF--QAGEHEFFISASIGTSLYPEDGTDVATLVKNADAAM 954
            +Q+  DA    N+L   F  PF    G+H   ++A++G SLYP DG++  TL++NADAAM
Sbjct: 542  IQYHEDATAAINQLRQVFEQPFVVSTGDH-LRLTATMGVSLYPSDGSNADTLLRNADAAM 600

Query: 955  YRSKAKGRNRVESYTRDLTAQANERVALEHELRRAIERDELSLYYQPKLSLATHELIGAE 1014
            YR+K++GRN    YT  LT ++ E + L+  L  A+E++ L L YQPK+ L T + +G E
Sbjct: 601  YRAKSEGRNNYAFYTESLTKESIEHLKLQSALYGALEQNALYLMYQPKVDLVTRKTVGVE 660

Query: 1015 ALIRWHHPTFGDVPPEHFIALAEENGMILQIGDWVLEQACRQMHAWQGHFDDFGPLSVNL 1074
            AL+RW+ P  G + P  FI +AE++G+I  IG WVLE AC+Q   W      FG ++VN+
Sbjct: 661  ALLRWNDPILGQISPSVFIPVAEKSGLIYDIGLWVLETACQQGVHWLAAGKQFGRIAVNV 720

Query: 1075 AGAQLRHPGLLGRIKQLLHDYQLDPGRLQLEITENFIMSQAEEALDVLHQLKDLGVQLAI 1134
            AG QL+    +  +K++L    L    L+LE+TE+ +M+  + A+  L  L DLG+ L++
Sbjct: 721  AGQQLQRNSFVEDVKRILTQTGLPATCLELEVTESVMMNNPDVAIRDLKLLGDLGIVLSV 780

Query: 1135 DDFGTGYSSLSYLKRLPLDFLKIDQSFVRGLPDDPHDAAIVRAIIALGHSMQFTIIAEGV 1194
            DDFGTGYSSL+YLK+LP+  LKIDQSFVR +P D ++ AI +A+I LGH+++  I+AEGV
Sbjct: 781  DDFGTGYSSLNYLKKLPIHKLKIDQSFVRDIPFDTNNTAIAKAVIVLGHALKLEIVAEGV 840

Query: 1195 ENPAQQAFLAAEGCEQMQGYIVSLPLPPALFAATFLRMR 1233
            E   Q  FL    C+Q QGY+ S P  PA   A F +++
Sbjct: 841  ETAEQADFLTQNLCDQAQGYLFSRPQLPADVEAFFTKLK 879



 Score = 34.7 bits (78), Expect = 4e-05
 Identities = 36/163 (22%), Positives = 72/163 (44%), Gaps = 35/163 (21%)

Query: 459 CLLEVNKAFE----DQIGLKAEHVVGKTATELNIWG----IQGVGPDLLQRVQTTSIRN- 509
           C   V KA++    D +G   E + GK   ++ + G    I+   P ++        +N 
Sbjct: 229 CNQSVEKAWDLPRSDIVGKTDEDLFGKAIADIFLNGDRLAIEAGAPIIVAECLDGENKNN 288

Query: 510 ------LEMPFLRSNGQAFTGLISAEPFQLDTIEAIVVVVRDITQLKETQQQLQTSEEKF 563
                 L++P L  +G+               +  ++ + R+I++ KE ++QL  +   F
Sbjct: 289 HLWLETLKLPALTPDGE---------------LAGVIGMTRNISKHKEVEEQLTLATNVF 333

Query: 564 AKAFHASPDGLLLSRQRDGLLIEVNDGFSRITGFTSATSLDQS 606
             +F    +G++++  R G + +VN  F  ITG++    L Q+
Sbjct: 334 KHSF----EGVVVT-DRHGNITDVNGAFYEITGYSREELLGQN 371