Pairwise Alignments

Query, 616 a.a., RNA polymerase subunit sigma-70 from Pseudomonas simiae WCS417

Subject, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

 Score =  214 bits (544), Expect = 6e-60
 Identities = 101/225 (44%), Positives = 158/225 (70%)

Query: 378 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 437
           A+K M+E+NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWW
Sbjct: 91  ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 150

Query: 438 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKI 497
           IRQ I R++ +Q RTIR+P+H+++ +N   R +R++ Q +  EPTPEE+   ++ P D +
Sbjct: 151 IRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDV 210

Query: 498 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKEATRDVLSGLTAR 557
            K+L++ +   S++TPIG D D  L D + DS    P      + ++E+  + L  L  +
Sbjct: 211 TKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPK 270

Query: 558 EAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 602
           + +VL  RFG+      TLEEVG++ ++TRER+RQI+ + LR+LR
Sbjct: 271 QKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315



 Score = 30.8 bits (68), Expect = 9e-05
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 8/73 (10%)

Query: 63  DKDSLMLADADTDEAAAEEAAAALAAVETDI-------GRTTDPVRMYMREMGTVELLTR 115
           + ++L + + D +  + EE  A   A E D+        ++ D  +MY+ E+G   LLT 
Sbjct: 16  EDEALEVLETDAELTSDEELVAVEGASE-DVREEFDASAKSLDATQMYLSEIGFSPLLTA 74

Query: 116 EGEIEIAKRIEEG 128
           E E+  A+R   G
Sbjct: 75  EEEVLYARRALRG 87