Pairwise Alignments

Query, 616 a.a., RNA polymerase subunit sigma-70 from Pseudomonas simiae WCS417

Subject, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

 Score =  790 bits (2039), Expect = 0.0
 Identities = 413/620 (66%), Positives = 489/620 (78%), Gaps = 11/620 (1%)

Query: 8   QSRIKELIVLGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFEAAPDKDSL 67
           QS++K+L++ G+EQGYLTYAEVNDHLP +I D EQVEDII+MINDMGI V E APD D L
Sbjct: 6   QSQLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAPDADDL 65

Query: 68  MLADADT--DEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRI 125
            L+D  T  DE AAE AAAAL++VE++IGRTTDPVRMYMREMGTVELLTREGEI+IAKRI
Sbjct: 66  ALSDDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRI 125

Query: 126 EEGIREVMGAIAHFPGTVDHILSEYTRVTTEGGRLSDVLSGYIDPDD--GIAPPAAEVPP 183
           E+GI +V  AIA +PGT+ +IL ++ RV  E  RL+D++SG++DP+D    AP A  +  
Sbjct: 126 EDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPNDMETEAPTATHIGS 185

Query: 184 PV------DAKAAKADDDTEDDDAEASGDDED-EVESGPDPIIAAQRFGAVSDQMEITRK 236
            +      D   A  +D+ ED+D +  G+  D E E G DP +A ++F  +  + +  + 
Sbjct: 186 ELSEADLADEDDAVVEDEDEDEDEDGDGESSDSEEEVGIDPELAREKFNELRGKFQNLQL 245

Query: 237 ALKKHGRANKQAIAELVALAELFMPIKLVPKQFEGLVERVRSALERLRAQERAIMQLCVR 296
           A+ + GR + QA      + ++F   +L PKQF+ LVE +R++++R+R QER +M+  V 
Sbjct: 246 AVNEFGRDSHQASEASDLVLDIFREFRLTPKQFDHLVETLRTSMDRVRTQERLVMKAVVE 305

Query: 297 DARMPRADFLRQFPGNEVDESWTDALAKGKAKYAEAIGRLQPDIIRCQQKLTALETETGL 356
            A+MP+  F+  F GNE +E W D +      Y   +   + +I R  QKL  +E ET L
Sbjct: 306 VAKMPKKSFIALFTGNESNEEWLDKVLASDKPYVAKVREQEEEIRRSIQKLQMIEQETSL 365

Query: 357 TIAEIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM 416
           ++  IKDI+RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM
Sbjct: 366 SVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM 425

Query: 417 KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQE 476
           KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQE
Sbjct: 426 KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQE 485

Query: 477 MGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPID 536
           MGREP PEEL ERM+MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIED+T++ P+D
Sbjct: 486 MGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLD 545

Query: 537 VATVESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAK 596
            AT  SLK ATRDVL+GLT REAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAK
Sbjct: 546 SATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAK 605

Query: 597 ALRKLRHPTRSEHLRSFLDE 616
           ALRKLRHP+RSE LRSFLDE
Sbjct: 606 ALRKLRHPSRSEVLRSFLDE 625