Pairwise Alignments

Query, 616 a.a., RNA polymerase subunit sigma-70 from Pseudomonas simiae WCS417

Subject, 369 a.a., RNA polymerase sigma factor, RpoD/SigA family from Synechocystis sp000284455 PCC 6803

 Score =  234 bits (597), Expect = 5e-66
 Identities = 115/250 (46%), Positives = 175/250 (70%), Gaps = 1/250 (0%)

Query: 366 RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 425
           R+  I   + R AK+ M+ +NLRLV+SIAK+Y NRG+ FLDLIQEG IGL +A +KF+  
Sbjct: 120 RQFEIWLYQLRAAKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPD 179

Query: 426 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE 485
           +GYKFSTYA WWIRQAITR+IA+ ARTIR+P+H++E +NK+ +  R + QE+ R P   E
Sbjct: 180 KGYKFSTYAYWWIRQAITRTIANDARTIRLPIHVVEKLNKIKKAQRSLKQELKRNPNEGE 239

Query: 486 LGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKE 545
           L   +++   ++R++L++ ++ +S+   +G  ED+ L D +ED  +Q P D+     L+ 
Sbjct: 240 LAAALDITPAQLRQLLQLRRQSLSLNHRVGKGEDTELVDLLEDQQLQLPEDLMNESMLRR 299

Query: 546 ATRDVLSG-LTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP 604
              +VL+  LT RE +V+ +R+GI  +  +TLEEVG  F+++RER+RQI++KA+RKLR P
Sbjct: 300 EIVEVLAEVLTEREMEVICLRYGIASHQSYTLEEVGNMFNLSRERVRQIQSKAMRKLRRP 359

Query: 605 TRSEHLRSFL 614
             +  L+ +L
Sbjct: 360 QVARRLKGWL 369



 Score = 25.0 bits (53), Expect = 0.006
 Identities = 8/26 (30%), Positives = 18/26 (69%)

Query: 469 ISRQMLQEMGREPTPEELGERMEMPE 494
           + +Q+ Q++ R P+ +E G+ +E P+
Sbjct: 93  VRQQLTQQLERTPSLQEWGQALEFPQ 118