Pairwise Alignments

Query, 616 a.a., RNA polymerase subunit sigma-70 from Pseudomonas simiae WCS417

Subject, 616 a.a., RNA polymerase sigma-70 factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  818 bits (2112), Expect = 0.0
 Identities = 416/611 (68%), Positives = 493/611 (80%), Gaps = 2/611 (0%)

Query: 8   QSRIKELIVLGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFEAAPDKDSL 67
           QS++K L+  G+EQGYLTYAEVNDHLP D+ D +Q+EDII+MINDMGI VFE APD D +
Sbjct: 6   QSQLKLLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIRVFEEAPDADDM 65

Query: 68  MLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEE 127
           M+++ +TDE AAEEAAAALA VE+++GRTTDPVRMYMREMGTVELLTREGEI IAKRIEE
Sbjct: 66  MMSEDNTDEDAAEEAAAALATVESELGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEE 125

Query: 128 GIREVMGAIAHFPGTVDHILSEYTRVTTEGGRLSDVLSGYIDPDD-GIAPPAAEVPPPVD 186
           GI  V  ++A +P  +  IL +Y +   +  RLSD++SG+++PD+  + P A  +   + 
Sbjct: 126 GINTVQSSVAEYPQAIAMILEQYDQYEADELRLSDIISGFVNPDEEDLGPTATHIGSELS 185

Query: 187 AKAAKADDDTEDD-DAEASGDDEDEVESGPDPIIAAQRFGAVSDQMEITRKALKKHGRAN 245
            +  + +DD EDD D +  GD +D+   GPDP  A +RF  +    E   K +   GR +
Sbjct: 186 EEDLEDEDDEEDDEDEDGDGDGDDDGNKGPDPEEARERFSQLRTAYESALKIIDAKGREH 245

Query: 246 KQAIAELVALAELFMPIKLVPKQFEGLVERVRSALERLRAQERAIMQLCVRDARMPRADF 305
            ++I  L  + E+F   +LVPKQF+ LV+ +RS ++R+R QER +M+LCV  A+MP+ +F
Sbjct: 246 PESIQALFEIGEIFKEFRLVPKQFDRLVKSMRSMMDRVRVQERLLMKLCVEQAKMPKKNF 305

Query: 306 LRQFPGNEVDESWTDALAKGKAKYAEAIGRLQPDIIRCQQKLTALETETGLTIAEIKDIN 365
           ++ F GNE +  W +A       YAE +  ++ D+ RC+ KL A+E ETGL IA IKDIN
Sbjct: 306 VKFFTGNETNLDWFEAEKTSNKPYAEGLRMVEEDVQRCRSKLAAIEEETGLVIAAIKDIN 365

Query: 366 RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 425
           RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
Sbjct: 366 RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 425

Query: 426 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE 485
           RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP+PEE
Sbjct: 426 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPSPEE 485

Query: 486 LGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKE 545
           L ERM MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIED+T++ P+D AT ESLK 
Sbjct: 486 LAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLKS 545

Query: 546 ATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPT 605
           AT +VL+GLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP+
Sbjct: 546 ATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 605

Query: 606 RSEHLRSFLDE 616
           RSE L+SFLDE
Sbjct: 606 RSEILKSFLDE 616