Pairwise Alignments

Query, 616 a.a., RNA polymerase subunit sigma-70 from Pseudomonas simiae WCS417

Subject, 330 a.a., RNA polymerase sigma factor RpoS from Enterobacter sp. TBS_079

 Score =  210 bits (535), Expect = 7e-59
 Identities = 105/255 (41%), Positives = 167/255 (65%), Gaps = 3/255 (1%)

Query: 356 LTIAEIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 415
           LT  E     RR   G+  +RR    M+E+NLRLV+ IA++Y NRGL  LDLI+EGN+GL
Sbjct: 71  LTAEEEVYFARRALRGDVASRR---RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGL 127

Query: 416 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 475
           ++AV+KF+  RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N   R +R++  
Sbjct: 128 IRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSH 187

Query: 476 EMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPI 535
           ++  EP+ EE+ E+++ P D + ++L++ +   S++TP+G D +  L D + D     P 
Sbjct: 188 KLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKDNGPE 247

Query: 536 DVATVESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEA 595
           D    + +K++    L  L A++ +VL  RFG+      TLE+VG++  +TRER+RQI+ 
Sbjct: 248 DTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQV 307

Query: 596 KALRKLRHPTRSEHL 610
           + LR+LR   + + L
Sbjct: 308 EGLRRLREILQGQGL 322



 Score = 30.8 bits (68), Expect = 9e-05
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 65  DSLMLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIEIAKR 124
           +  ++ +  +D   AEE   +  A +    R  D  ++Y+ E+G   LLT E E+  A+R
Sbjct: 27  EKALVEEEPSDNDLAEEELLSQGATQ----RVLDATQLYLGEIGYSPLLTAEEEVYFARR 82

Query: 125 IEEG 128
              G
Sbjct: 83  ALRG 86