Pairwise Alignments

Query, 657 a.a., DNA primase from Pseudomonas simiae WCS417

Subject, 587 a.a., DNA primase from Vibrio cholerae E7946 ATCC 55056

 Score =  449 bits (1155), Expect = e-130
 Identities = 230/452 (50%), Positives = 308/452 (68%), Gaps = 14/452 (3%)

Query: 1   MAGLIPQSFIDDLLNRTDIVDVVSSRVQLKKAGKNYTACCPFHKEKTPSFSVSPDKQFYY 60
           MAG IP+SFIDDLL R DIVDV+ +RV+LKK GKNY+ACCPFH EKTPSFSVS +KQFY+
Sbjct: 1   MAGHIPRSFIDDLLARLDIVDVIDARVKLKKKGKNYSACCPFHNEKTPSFSVSQEKQFYH 60

Query: 61  CFGCGAGGNALGFLMDHDNLDFPQAIEDLAKAAGMEVPREESGRPHKP--------RQPT 112
           CFGCGA GNA+ F+M+++ ++FP+AIE+LA   G+EV REE   P  P        +   
Sbjct: 61  CFGCGAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREER-TPSSPFAKNTPAVKSED 119

Query: 113 DSPLYPLLTAAADFYRQALKSHPQRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYKH 172
              LY L+ + A FYRQ LK  P  K A++YLK RGL+GEI + FG+G+    WD + ++
Sbjct: 120 KRSLYDLMGSIAQFYRQQLKV-PANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRN 178

Query: 173 LSSDTLQQKAMIDAGLLVENAETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGDDKPKY 232
                  +  ++ AG+L+EN + G+RYDRFR RVMFPIRD RGR+I FGGR+     PKY
Sbjct: 179 FGQQRSSEDMLVTAGMLIEN-DNGRRYDRFRGRVMFPIRDRRGRVIGFGGRITEQGTPKY 237

Query: 233 LNSPETPVFHKGQELYGLFEARKHNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTATS 292
           LNSPETP+FHKG+ELYGL+E  +  R   +I+VVEGYMDV+ALAQ G+  +VA+LGT+T+
Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGTSTT 297

Query: 293 EEHMKRLFRVVPSVLFCFDGDQAGRNAAWRALEATLSSLQDGRRARFLFLPEGEDPDTLV 352
            +H++ LFR    V+ C+DGD+AGR+AAWRALE  LS L+ G   +FLFLP+GEDPD+ V
Sbjct: 298 GDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPDSYV 357

Query: 353 RSEGTDAFRARINQHAQPLADYFFQQLTE--EADPRSLEGKAHMATLAAPLIDKVPGANL 410
           R  G   F  ++  +A PL+ Y F+ L E  + +  S EGK+ +  +A PLIDK+P   L
Sbjct: 358 RKYGKADFEQQV-ANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPLIDKIPDPFL 416

Query: 411 KSLMRMRLQEITGLSGEAVSQLVHNTPHDAPP 442
           + ++   L E TG   +   +    T +   P
Sbjct: 417 QEILEKLLDERTGFDHQLRRKKARKTENRPAP 448



 Score = 50.8 bits (120), Expect = 2e-10
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 4/136 (2%)

Query: 514 PTLIALRTLIHHPQLAEKVESADHFANASNTYAQVLIALIEAVQKNPKLNSIQLMARWHG 573
           P    +  LI +P  AE V       +           ++E  ++ P + + QL+  W  
Sbjct: 456 PMRDVIALLIQNPSYAELVPDLASVRHLMIPGLDTFSEVLEKCRQYPHITTGQLLEHWRD 515

Query: 574 TEQGRLLKALAEKEWLIDGDNLEQQFLDTITRLSAGQHTQTLDELIKKARQPGLSAEEQI 633
           ++   LL  LA  E  +  DN E+ FLD++ ++ A    + ++ L  K R  GLS EE+ 
Sbjct: 516 SKNETLLSRLASWEIPLVEDNQEELFLDSLDKILAQCVEKQIENLQAKERSVGLSTEEK- 574

Query: 634 QIAKQMRDLLKQNVSA 649
              ++++DL+ + + A
Sbjct: 575 ---RELQDLILKGLKA 587