Pairwise Alignments

Query, 270 a.a., ribosomal RNA small subunit methyltransferase A from Pseudomonas simiae WCS417

Subject, 267 a.a., 16S ribosomal RNA methyltransferase A from Methanococcus maripaludis S2

 Score =  124 bits (310), Expect = 3e-33
 Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 9/229 (3%)

Query: 8   RARKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLLASGGQLDVVELDK 67
           R  K+ GQ FL D   + + +        D +LE+G G+GALT+ L     ++ V+ELD+
Sbjct: 2   RQSKKLGQCFLKDKNFVKKAINRAEITNNDIVLEVGLGEGALTKELAKIAKKVYVIELDE 61

Query: 68  DLIPILNQQFADKPNFNLHQGDALKFDFNTLNAAPNSLRVVGNLPYNISTPLIFHLLNNA 127
            L P  ++  A+  N  +   DALK D   L       ++V NLPY IS+P+ F  L   
Sbjct: 62  RLKPFADEITAEFENVEIIWSDALKVDLKNLGFN----KIVANLPYQISSPITFKFLEED 117

Query: 128 GIIRDMHFMLQKEVVERLAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKVDSA 187
                   M Q E  +R+A  P   ++ RLS+ VQY+  VE +  V P AF+P P V+SA
Sbjct: 118 --FETAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFICKVPPSAFSPKPDVNSA 175

Query: 188 IVRLVPHAVLPHPAKDHKLLERVVREAFNQRRKTLRNTLKALLSNAEIE 236
           IV+L       H  KD +  ++V++  F  R +T++  L  + S+ EIE
Sbjct: 176 IVKLTKREPKYH-VKDEEFFKKVLKAVFQHRNRTIKRAL--IDSSHEIE 221