Pairwise Alignments

Query, 936 a.a., LPS biosynthesis protein from Pseudomonas simiae WCS417

Subject, 787 a.a., LPS assembly protein LptD from Vibrio cholerae E7946 ATCC 55056

 Score =  288 bits (736), Expect = 1e-81
 Identities = 206/740 (27%), Positives = 329/740 (44%), Gaps = 78/740 (10%)

Query: 137 EPTRPGMNDKTNKSDAPTFIGAKASRYEQEQQVATLAGDVVMRQGSMQLESEEASLYQAE 196
           EPT PG      ++D    I           Q AT +G+VV+ QG  ++ ++  +L+Q E
Sbjct: 51  EPTNPGQQPINVEADKLEAING---------QKATYSGNVVVVQGKKRIAADNVTLHQQE 101

Query: 197 NRGELNGKVRLRDNGALIVGDHAEVQLDTGAAQIDNAEYVLHKSRIRGNALYAKRAENAI 256
           N     G V+  D         A   L+T    ++N  Y       RG A+Y  +   A+
Sbjct: 102 NVVVAEGNVQFSDGEIKTHSTKATNHLNTDEMTLENTRYQFLCEPGRGEAVYVSKTGKAV 161

Query: 257 IRLKDGTYTTCEPDSNAWQLRGNNITLNPATGFGTATNATLRIKNIPILYTPYIYFPIDD 316
             ++DG+ T+C    NAW++R ++I ++      T  N  L ++N+P+ Y PY+  PI D
Sbjct: 162 YEIEDGSITSCPDGDNAWRMRASSIDVDQNEEIATFYNPRLEVQNVPVFYLPYLTVPIGD 221

Query: 317 RRQSGFLPPSFSTGSETGFTLVTPYYFNLAPNYDATLYPQYMTKRGLLMEGEFRYLTKSS 376
            R++GFL P+ S GS  G++   P Y+NLAP YD      YM KRG  +   FRYLT   
Sbjct: 222 TRKTGFLYPTASYGSRNGYSFEVPIYWNLAPQYDLETTFNYMQKRGTQLNSVFRYLTDFG 281

Query: 377 EGQFGGAYLNDDNDERSKQTDYEKTRYMLNWQHRGGLDSRLATQVDYTRISDPYYFQDLK 436
            GQ    YL DD             R+   ++H G        ++DY+++SD  YF DL 
Sbjct: 282 AGQIKSEYLADDQLHTEL-----GDRWAFQYEHNGIFQQAWKFEIDYSKVSDINYFSDLD 336

Query: 437 SFQEGVESRD--ALNQQGSVTYRGDSYQARLNVQAYQLA---TISQITPYDRLPQITFNG 491
           S   GV +R+   L Q+G  TYR D++ + L V+ +QL    T S   PY  +PQ+++N 
Sbjct: 337 S---GVGNREDGQLIQEGRATYRSDNWDSALLVRDFQLLTKDTTSTNLPYRLMPQLSYNY 393

Query: 492 ALPYHPGGLNFTYETEAVRFERSLEKGTFTDQDGLVSPRLDTYVTGLTRANGTRLNVAPA 551
             P     L+    +   RFE        TD  G              + + TR+++ P 
Sbjct: 394 YAPETMKYLDLDLVSHVSRFE--------TDARG--------------KPSATRVHIEPG 431

Query: 552 VDYPMNWTYGFITPKLKYVYTKYDLDLDSIGKNQIIAQQAAATAANPYAGGDFKSSQDRA 611
           +  P + T+G  T + + + T Y  DLD                         + S  R 
Sbjct: 432 LKIPFSNTWGNWTTEARVLGTYYQQDLDKT------------------TDAKLEESVTRV 473

Query: 612 VPVASVDSGLYFDRNTNWFGKDYRQTLEPRAFYLYVPNKDQSDIPVFDTSEYSFSYASLF 671
           +P     +G+  +R+T     DY QTLEP+  YLYVP K Q +I ++D++     Y  LF
Sbjct: 474 IPEIRSVAGIVLERDTVLL-DDYTQTLEPKIQYLYVPEKYQDNIGLYDSTLLQTDYYGLF 532

Query: 672 RDNRFSGSDRIGDENKLSLGLTSRWIEENGFERQRVSVGQAVYFKDREVQLPGILAADRA 731
           R  ++SG DRI   N++S G ++R+ + N  ER  ++ GQ +++ D ++  P     D  
Sbjct: 533 RSRKYSGVDRIESANQVSYGASTRFFDSNYKERLNIAFGQ-IFYLDSKLN-PSNKNPDST 590

Query: 732 DAQSDVSPVALDYEFRFNRDWRATADYNWDTEEHSPRSGSAMLHYQPEDNPNKIINVGYR 791
             ++  S  A++ +F F           +D +  + + G++ L Y+        I   YR
Sbjct: 591 SDKTSYSAWAVEMDFNFADYLFYHGGIQYDIDSQAVQLGNSTLEYRVASG---YIQANYR 647

Query: 792 YRNDQVVYNQLTGKWQFGGDYGQPGDPNFVKDYYKIQQHDFSMMWPIIPQWNLITRWQYD 851
           Y     + N +        D  + G          I Q      + +  +W+   ++ YD
Sbjct: 648 YVAKDYIRNTVGDSITNIDDITRDG----------ISQAGILAGYQLSRKWSASGQYYYD 697

Query: 852 YARNRTLEAFGGFEYDNCCW 871
              +  LE      Y + CW
Sbjct: 698 LTTDEALEWLANLTYTSDCW 717