Pairwise Alignments

Query, 936 a.a., LPS biosynthesis protein from Pseudomonas simiae WCS417

Subject, 780 a.a., LPS assembly protein LptD from Klebsiella michiganensis M5al

 Score =  316 bits (809), Expect = 4e-90
 Identities = 230/809 (28%), Positives = 368/809 (45%), Gaps = 90/809 (11%)

Query: 140 RPGMNDKTNKSDAPTFIGAKASRYEQEQQVATLAGDVVMRQGSMQLESEEASLYQAENRG 199
           RP +  K N  D P  I A  ++       A   G+V + QG+ +L+++E  L+Q +  G
Sbjct: 40  RPLVEGKPN--DLPVTIDADHAKGNYPDN-AVFTGNVDINQGNSRLQADEVQLHQQQADG 96

Query: 200 ELN--------GKVRLRDNGALIVGDHAEVQLDTGAAQIDNAEYVLHKSRIRGNA-LYAK 250
           +          G V   DN  ++ G  A   L+T    +   +Y +   + RG A L  +
Sbjct: 97  QPQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQ 156

Query: 251 RAENAIIRLKDGTYTTCEPDSNAWQLRGNNITLNPATGFGTATNATLRIKNIPILYTPYI 310
           R EN    L++G++T+C P S+ W + G+ +  +         NA  ++ ++PI Y+PY+
Sbjct: 157 RGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYL 216

Query: 311 YFPIDDRRQSGFLPPSFSTGSETGFTLVTPYYFNLAPNYDATLYPQYMTKR-GLLMEGEF 369
             P+ D+R+SGFL P+    ++ G     PYY+N+APN+DATL P YM+KR G++ E EF
Sbjct: 217 QLPVGDKRRSGFLIPNAKYSTKNGAEFYLPYYWNIAPNFDATLTPHYMSKRGGVMWENEF 276

Query: 370 RYLTKSSEGQFGGAYLNDDNDERSKQT-DYEKTRYMLNWQHRGGLDSRLATQVDYTRISD 428
           RYLTK+  G     YL  D   +   + D    R++  W H G +D       DYT++SD
Sbjct: 277 RYLTKAGTGLIEFDYLPSDKIYQDDHSGDSNSRRWLFYWNHSGVVDQVWRFNADYTKVSD 336

Query: 429 PYYFQDLKSFQEGVESRDALNQQGSVTYRGDSYQARLNVQAYQLATISQITPYDRLPQIT 488
           P YF D  S + G  +     Q+ S  Y   ++ A ++ + +Q+        Y   PQ+ 
Sbjct: 337 PDYFNDFSS-KYGSSTDGYATQKLSAGYANQNFDATVSTKQFQVFNRDSSNAYSAEPQLD 395

Query: 489 FNGALPYHPGGLNFTYETEAVRFERSLEKGTFTDQDGLVSPRLDTYVTGLTRANGTRLNV 548
            N       G  +     +AV F  S  +                          TR++ 
Sbjct: 396 VN-YYQNDVGPFDTHLYGQAVHFVNSNSR----------------------MPEATRVHF 432

Query: 549 APAVDYPMNWTYGFITPKLKYVYTKYDLDLDSIGKNQIIAQQAAATAANPYAGGDFKSSQ 608
            P ++ P++  +G I  + K + T Y              QQ+     N   G D+K S 
Sbjct: 433 EPTINLPLSNGWGSINTEAKLLATHY--------------QQSNLDDYNAANGTDYKDSV 478

Query: 609 DRAVPVASVDSGLYFDRNTNWFGKDYRQTLEPRAFYLYVPNKDQSDIPVFDTSEYSFSYA 668
           +R +P   VD  + F+R+     ++Y QTLEPR  YLY+P +DQS I  +D++     Y+
Sbjct: 479 NRVMPQFKVDGKMVFERDMQ---ENYTQTLEPRMQYLYIPYRDQSKIGTYDSTLLQSDYS 535

Query: 669 SLFRDNRFSGSDRIGDENKLSLGLTSRWIEENGFERQRVSVGQAVYFKDREVQLPGILAA 728
            LFRD  +SG DRI   N++S G+TSR  +    ER  +SVGQ  YF +       I   
Sbjct: 536 GLFRDRSYSGLDRIASANQVSTGITSRVYDAAAVERFNISVGQIYYFTEARTGDDNINWE 595

Query: 729 DRADAQSDVSPVALDYEFRFNRDWRATADYNWDTEEHSPRSGSAMLHYQPEDNPNKIINV 788
           +     S V   A D  +R   DW       +DT   +  +GS  + Y+ ++  N+++ +
Sbjct: 596 NNDTRGSLV--WAGDTYWRITDDWGLRGGIQYDTRLDNVATGSGTVEYRRDE--NRLVQL 651

Query: 789 GYRYRNDQVVYNQLTGKWQFGGDYGQPGDPNF-VKDYYK--IQQHDFSMMWPIIPQWNLI 845
            YRY + + +   L               P++     YK  I Q   +  WPI+ +W ++
Sbjct: 652 NYRYASPEYIQATL---------------PSYSTAKQYKDGISQVGMTASWPIVDRWAVV 696

Query: 846 TRWQYDYARNRTLEAFGGFEYDNCCWKLRV-----INRYWVSNDEYSQIAPLNEKGDHGL 900
             + YD    ++     G +Y +CC+ +RV     IN +  S+ E         K D+  
Sbjct: 697 GAYYYDTNTRKSANQMLGVQYSSCCYAIRVGYERKINGWDNSSSE--------SKYDNTF 748

Query: 901 FFQIVLKGLGGLTGAKVESFLDKGIEGYR 929
            F I L+GL    G   +  L   I  Y+
Sbjct: 749 GFNIELRGLSSNYGLGTQQMLRSNILPYQ 777