Pairwise Alignments

Query, 274 a.a., polyamine ABC transporter permease from Pseudomonas simiae WCS417

Subject, 275 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Shewanella loihica PV-4

 Score =  141 bits (355), Expect = 2e-38
 Identities = 87/257 (33%), Positives = 142/257 (55%), Gaps = 9/257 (3%)

Query: 25  LLFLILPVLVIIPLSFNSGSFLVYPLQGFSLHWYQDFFASAEWMRALKNSVIVAPAATVL 84
           + FL  P+ +++  SFN  S LV    GFS  WY + F   + + A+  S+ VA  A+ +
Sbjct: 19  MFFLYAPMFILVFYSFNE-SKLVTVWGGFSAKWYGELFRDDQILDAVATSLKVAFFASTM 77

Query: 85  AMVFGTLAAIGLTR-GNFPGKALVMALVISPMVVPVVIIGVASYLFFAPLG--LG----N 137
           A++ GT+AA  +TR     GK  +  ++ +P+V+P VI G++  L F  +   LG     
Sbjct: 78  AVILGTMAAFVMTRFARSWGKMTLSNMITAPLVMPEVITGLSLLLLFVHMADLLGWPAER 137

Query: 138 SFFSLIVVHAVLGVPFVIITVSATLQGFNHNLVRAAASLGASPLTAFRRVTLPLIAPGVI 197
              ++ + H+     +V + VS+ L+  + ++  AA  LGA+PL  F  +T+P+I+P +I
Sbjct: 138 GMLTVWIAHSTFCAAYVAVVVSSRLRELDMSIEEAAQDLGATPLKTFFHITVPMISPALI 197

Query: 198 SGALFAFSTSFDEVVVTLFLAGPEQATLPRQMFSGIRENLSPTIAAAATLLIAFSVLLLL 257
           +G L +FS S D++V+  F +GP   TLP  +FS +R  +SP I A ATL+I   V L+ 
Sbjct: 198 AGWLLSFSLSLDDLVIASFASGPGATTLPMVVFSSVRMGVSPKINALATLIILI-VSLIA 256

Query: 258 TLEWLRGRSEKLRTAQV 274
            + W   R    R+  V
Sbjct: 257 FISWYLARRADKRSRMV 273