Pairwise Alignments

Query, 251 a.a., 23S rRNA methyltransferase from Pseudomonas simiae WCS417

Subject, 519 a.a., RNA methyltransferase TrmH, group 3 from Synechococcus elongatus PCC 7942

 Score =  178 bits (451), Expect = 2e-49
 Identities = 95/245 (38%), Positives = 150/245 (61%), Gaps = 9/245 (3%)

Query: 4   EKIYGVHAVEALLRHHPKRVKQVWLAEG-RSEPRVQALVELATQNKVAIGQAERREMDVW 62
           E IYG HAV A L+ + + + ++W+    R E     L++ A      + +     +   
Sbjct: 242 ELIYGRHAVLAALQGN-RTLNRIWVTPRLRYESTFLELIDAAKAGGAVVDEVPVERIRQL 300

Query: 63  VEG-VHQGVVADVSPSQVWGEAMLDELLDRTEGA---PLLLVLDGVTDPHNLGACLRSAD 118
            +G VHQG+ A V+P   +    L +L+ + + A   P+++V DG+TDPHNLGA +R+A+
Sbjct: 301 TDGAVHQGIAAQVAP---YPYQELSDLIAQAKAATTDPVIVVADGITDPHNLGAIIRTAE 357

Query: 119 AAGALAVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGE 178
           A GA  +++P+ ++  +T  V KVA GA E  P+  V NL R LE+L+  G W+ G AGE
Sbjct: 358 ALGAHGLVIPQRRAVGVTAAVAKVAAGALESFPVARVVNLNRALEELKDAGFWIYGAAGE 417

Query: 179 AEVSIYDQDLTGPTILIMGAEGKGMRRLTREHCDYLVHLPMAGSVSSLNVSVATGVCLFE 238
           A+ SI++   +GP +L++G+E +G+  LTRE CD+L+ +P+ G  +SLN SVA G+ L+E
Sbjct: 418 AKQSIHETSFSGPVVLVVGSEDEGLSLLTRERCDHLISIPLRGKTNSLNASVAAGMVLYE 477

Query: 239 AQRQR 243
             RQR
Sbjct: 478 VSRQR 482